Thanks for testing, Rob! It was pre-compilation problem. I switched on pre-compilation for a package that depends on Dopri.jl which itself does not use pre-compilation. My bad...
Am Montag, 30. Mai 2016 18:25:29 UTC+2 schrieb Rob J Goedman: > > Helge, > > Not sure if this helps, but below the (successful) output on my machine. > I’m on OS X 11.6-beta, but I don’t think that is important. I do remember > installing an updated Xcode. > > Regards, > Rob > > On May 30, 2016, at 08:41, Helge Eichhorn <[email protected] > <javascript:>> wrote: > > > > Hi! > > I am having a strange problem with a segfault that seemingly appeared out > of nowhere while calling Fortran code on OSX. > > When I try to run the tests of my Dopri.jl > <https://github.com/helgee/Dopri.jl> package on Julia 0.4.5 on OSX > 10.11.5 the process consistently fails with this error message: > signal (11): Segmentation fault: 11 > unknown function (ip: 0x0) > > Tests pass on master and 0.3.12. Could somebody try to reproduce this > behavior on their machine? What puzzles me is that this did not happen 23 > days ago when I fixed the lastest issue with the package. In the meantime I > did not change anything about neither the code nor the Julia runtime. I did > install an OS update, though. > > Any ideas? > > The only other data point I have is that the tests also segfault on 0.3 on > Travis but not consistently. On the third to fourth re-run the build > usually succeeds. I have attached the log. > > Cheers, > Helge > <travis.log> > > > > *julia> **Pkg.add("Dopri")* > *INFO: No packages to install, update or remove* > *INFO: Package database updated* > > *julia> **using Dopri* > > *julia> **Pkg.test("Dopri")* > *INFO: Testing Dopri* > *ERROR: LoadError: could not spawn > setenv(`/Users/rob/.julia/v0.4/Dopri/deps/testrunner`,Union{ASCIIString,UTF8String}["LD_LIBRARY_PATH=/Users/rob/.julia/v0.4/Dopri/deps"]): > > no such file or directory (ENOENT)* > * in _jl_spawn at process.jl:262* > * in anonymous at process.jl:415* > * in setup_stdio at process.jl:403* > * in spawn at process.jl:414* > * in open at process.jl:478* > * in open at process.jl:492* > * in include at > /Applications/Julia-0.4.5.app/Contents/Resources/julia/lib/julia/sys.dylib* > * in include_from_node1 at > /Applications/Julia-0.4.5.app/Contents/Resources/julia/lib/julia/sys.dylib* > * in process_options at > /Applications/Julia-0.4.5.app/Contents/Resources/julia/lib/julia/sys.dylib* > * in _start at > /Applications/Julia-0.4.5.app/Contents/Resources/julia/lib/julia/sys.dylib* > *while loading /Users/rob/.julia/v0.4/Dopri/test/runtests.jl, in > expression starting on line 9* > *=======================================================[ ERROR: Dopri > ]=======================================================* > > *failed process: > Process(`/Applications/Julia-0.4.5.app/Contents/Resources/julia/bin/julia > --check-bounds=yes --code-coverage=none --color=yes > /Users/rob/.julia/v0.4/Dopri/test/runtests.jl`, ProcessExited(1)) [1]* > > > *==============================================================================================================================* > *ERROR: Dopri had test errors* > * in error at > /Applications/Julia-0.4.5.app/Contents/Resources/julia/lib/julia/sys.dylib* > * in test at pkg/entry.jl:803* > * in anonymous at pkg/dir.jl:31* > * in cd at file.jl:22* > * in cd at pkg/dir.jl:31* > * in test at pkg.jl:71* > > *julia> **Pkg.build("Dopri")* > *INFO: Building Dopri* > > *julia> **Pkg.test("Dopri")* > *INFO: Testing Dopri* > *INFO: Dopri tests passed* > > *julia> **versioninfo()* > Julia Version 0.4.5 > Commit 2ac304d (2016-03-18 00:58 UTC) > Platform Info: > System: Darwin (x86_64-apple-darwin13.4.0) > CPU: Intel(R) Core(TM) i7-4980HQ CPU @ 2.80GHz > WORD_SIZE: 64 > BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Haswell) > LAPACK: libopenblas64_ > LIBM: libopenlibm > LLVM: libLLVM-3.3 > > *shell> **gfortran -v* > Using built-in specs. > COLLECT_GCC=gfortran > > COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/5.3.0/libexec/gcc/x86_64-apple-darwin15.0.0/5.3.0/lto-wrapper > Target: x86_64-apple-darwin15.0.0 > Configured with: ../configure --build=x86_64-apple-darwin15.0.0 > --prefix=/usr/local/Cellar/gcc/5.3.0 > --libdir=/usr/local/Cellar/gcc/5.3.0/lib/gcc/5 > --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 > --with-gmp=/usr/local/opt/gmp --with-mpfr=/usr/local/opt/mpfr > --with-mpc=/usr/local/opt/libmpc --with-isl=/usr/local/opt/isl > --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking > --enable-checking=release --enable-lto --with-build-config=bootstrap-debug > --disable-werror --with-pkgversion='Homebrew gcc 5.3.0' --with-bugurl= > https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls > --enable-multilib > Thread model: posix > gcc version 5.3.0 (Homebrew gcc 5.3.0) > >
