Dear All
I want to use Jupyter for my NGS data downstream analysis I facing a
problem for "No module named 'custom_inherit"
import ipyrad.analysis as ipa
import pandas as pd
dfchunks = pd.read_csv(
"/Users/safiqulislam/Desktop/pop/outfiles/new.vcf.gz",
sep="\t",
skiprows=1000,
chunksize=1000,
)
# init a PCA tool and filter to allow no missing data
next(dfchunks).head()
converter = ipa.vcf_to_hdf5(
name="new",
data="/Users/safiqulislam/Desktop/pop/outfiles/new.vcf.gz",
ld_block_size=20000,
)
# run the converter
converter.run()
###############its worked perfectly, but when I want use pca then it
creates this custom_inherit problem.###################
pca = ipa.pca(
data="./analysis-vcf2hdf5/new.snps.hdf5",
mincov=1.0,
)
---------------------------------------------------------------------------ModuleNotFoundError
Traceback (most recent call
last)<ipython-input-45-de285ecc41b2> in <module>----> 1 from toyplot.canvas
import Canvas
~/opt/miniconda3/envs/py3/lib/python3.6/site-packages/toyplot/__init__.py in
<module> 11 import logging 12 ---> 13 from toyplot.canvas import Canvas
14 15 __version__ = "0.18.0"
~/opt/miniconda3/envs/py3/lib/python3.6/site-packages/toyplot/canvas.py in
<module> 13 import numpy 14 import six---> 15 import
toyplot.coordinates 16 import toyplot.broadcast 17 import toyplot.color
~/opt/miniconda3/envs/py3/lib/python3.6/site-packages/toyplot/coordinates.py in
<module> 16 17 import toyplot.broadcast---> 18 import toyplot.color
19 import toyplot.data 20 import toyplot.format
~/opt/miniconda3/envs/py3/lib/python3.6/site-packages/toyplot/color.py in
<module> 12 import xml.etree.ElementTree as xml 13 ---> 14 import
custom_inherit 15 import numpy 16 import six
ModuleNotFoundError: No module named 'custom_inherit'
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