http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4926
Christopher Brooks <[email protected]> changed: What |Removed |Added ---------------------------------------------------------------------------- Status|ASSIGNED |RESOLVED Resolution| |MOVED --- Comment #5 from Christopher Brooks <[email protected]> 2012-08-06 17:00:50 PDT --- To find files that have the same name in both Ptolemy II and Kepler: Look for duplicate file names: # Get all the .java files except the ptolemy ones find . -name "*.java" | grep -v ptolemy/src > /tmp/kjnop # Get all the ptolemy.java files find ptolemy/src -name "*.java" > /tmp/pj # Get the Kepler .java files awk -F / '{print $NF}' /tmp/kjnop | sort > /tmp/kjnopl # Get the Ptolemy .java files awk -F / '{print $NF}' /tmp/pj | sort > /tmp/pjl # Print any files in common, create a script to find them in the Kepler java files comm -12 /tmp/kjnopl /tmp/pjl | awk '{print "grep /" $1 " /tmp/kjnop"}' > /tmp/doit # Run the script sh /tmp/doit | sort These are to be ignored: ######## ./actors/src/org/geon/DatabaseQuery.java Ignore? Duplicate of ptolemy/src/ptolemy/actor/lib/database/DatabaseQuery.java ######## ./actors/src/org/sdm/spa/actors/piw/viz/Sequence.java Ignore: Undocumented file, seems to construct a gene sequence? ######## ./actors/src/org/sdm/spa/Pause.java Ignore: Name match with: ptolemy/src/ptolemy/domains/coroutine/lib/Pause.java ##### ./build-area/src/org/kepler/build/Branch.java ./build-area/src/org/kepler/build/modules/Node.java ./build-area/src/org/kepler/build/Tag.java ./build-area/src/org/kepler/build/Test.java ./build-area/src/org/kepler/build/util/ExecuteCommands.java Ignore these, they are part of the build system. ###### ./core/src/org/kepler/moml/DocumentationAttribute.java Ignore. This is deprecated: @deprecated Use ptolemy.vergil.basic.KeplerDocumentationAttribute instead. ###### ./core/src/org/kepler/objectmanager/cache/CacheManager.java ./core/src/org/kepler/objectmanager/data/db/Attribute.java ./core/src/org/kepler/objectmanager/data/db/Constraint.java ./core/src/org/kepler/objectmanager/data/db/Entity.java ./core/src/org/kepler/sms/Constants.java Ignore the above, the names are common enough ###### ./gui/src/org/kepler/gui/AboutAction.java Ignore. Matches ptolemy/src/ptolemy/backtrack/eclipse/plugin/actions/AboutAction.java #### ./io/src/org/kepler/io/DirectoryListing.java ./outreach/workflows/demos/getting-started/HelloWorld.java Ignore. I've submitted separate bugs for the non-ignored duplicates. I've checked the Kepler tree for code that says Edward is the author and it looks good: bash-4.1$ cat /tmp/kjnop | xargs grep "Edward A. Lee" ./gui/src/org/kepler/gui/KeplerXMLIcon.java: * @author Chad Berkley, based on XMLIcon by Steve Neuendorffer, John Reekie, Contributor: Edward A. Lee ./gui/src/org/kepler/gui/frame/MultiCompositeGraphFrame.java: @author Daniel Crawl, Possibly based on CaseGraphFrame by Edward A. Lee. ./gui/src/org/kepler/gui/frame/CaseGraphFrame.java: @author Daniel Crawl, based on ptolemy.vergil.modal.CaseGraphFrame by Edward A. Lee ./gui/src/org/kepler/gui/frame/CaseGraphTableau.java: @author Daniel Crawl, based on ptolemy.vergil.modal.CaseGraphFrame by Edward A. Lee ./gui/src/org/kepler/gui/frame/MultiCompositeTableau.java: @author Daniel Crawl, Possibly based on CaseGraphTableau by Edward A. Lee. ./gui/src/org/kepler/gui/frame/KeplerGraphTableau.java: @author Based on GraphTableau by Steve Neuendorffer and Edward A. Lee ./gui/src/org/kepler/gui/KeplerIconLoader.java: * @author Christopher Brooks, contributor: Edward A. Lee ./actors/src/org/sdm/spa/gui/UserInteractiveShell.java: * This actor code is adopted from InteractiveShell.java by Edward A. Lee ./actors/src/org/sdm/spa/Pause.java: * ptolemy.actor.lib.Stop actor code by Edward A. Lee. ./actors/src/org/sdm/spa/Pause.java: * @author Ilkay Altintas, Contributors: Edward A. Lee and Christopher Brooks. ./actors/src/org/sdm/spa/CommandLineExec.java: * Contributor: Edward A. Lee grep: ./actors/src/org/resurgence/actor/.#FileCopier.java: No such file or directory ./util/src/util/LineReader.java: * @author Efrat Jaeger, based on LineReader by Edward A. Lee, Yuhong Xiong I'm closing this because we have other bugs and opening a new bug for 2.5.0 -- Configure bugmail: http://bugzilla.ecoinformatics.org/userprefs.cgi?tab=email ------- You are receiving this mail because: ------- You are the QA Contact for the bug. _______________________________________________ Kepler-dev mailing list [email protected] http://lists.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-dev
