Hi Allen --
I changed the file name input so that the value was not surrounded by quotes
(").I changed the file name to match the file you attached to your email (capitalization). I took out the call to pairs(df) in the ReadFile actor because this error was showing in the logs: --------- 11/11/11 10:58:21.850 AM [0x0-0xad1ad1].org.kepler.build.runner.Kepler: [null] ERROR (org.ecoinformatics.seek.R.RExpression:fire:935) R standard error: 11/11/11 10:58:21.851 AM [0x0-0xad1ad1].org.kepler.build.runner.Kepler: [null] Error in plot.window(...) : need finite 'xlim' values 11/11/11 10:58:21.851 AM [0x0-0xad1ad1].org.kepler.build.runner.Kepler: [null] Calls: pairs ... localPlot -> plot -> plot.default -> localWindow -> plot.window 11/11/11 10:58:21.851 AM [0x0-0xad1ad1].org.kepler.build.runner.Kepler: [null] In addition: Warning messages: 11/11/11 10:58:21.851 AM [0x0-0xad1ad1].org.kepler.build.runner.Kepler: [null] 1: In min(x) : no non-missing arguments to min; returning Inf 11/11/11 10:58:21.851 AM [0x0-0xad1ad1].org.kepler.build.runner.Kepler: [null] 2: In max(x) : no non-missing arguments to max; returning -Inf 11/11/11 10:58:21.851 AM [0x0-0xad1ad1].org.kepler.build.runner.Kepler: [null] Execution halted And it gave me a [crazy?] zig-zag plot. Please see attached workflow that I edited. Thanks, -ben
VerticalFoliageProfile.kar
Description: MIDI audio
<<inline: CalcVegProfile-1.png>>
On Nov 11, 2011, at 10:25 AM, Hurlbert, Allen Hartley wrote: > Hey Ben, > > Sorry for my poor question-asking etiquette. > > I'm running Kepler 2.2 on Windows XP x64. I've got R 2.13.1 installed. > > Yes, the demos run fine (although I'll note that finding the demo files took > some work; the "getting-started-guide" specified the "demos/getting-started" > directory and it would have been useful to know the more complete path: > "Kepler-2.2/outreach-2.2.0/workflows/demos/getting-started"). > > The workflow and input file are attached. > > When I open a Command Prompt, I am in the directory C:\Documents and > Settings\Hurlbert. Typing 'R' here does not run R. > > I assume this is an easily fixable issue. In addition, any general comments > about how I went about constructing the basic workflow would be useful. I'm > assuming there are other errors that will crop up! > > Hope all's well in SB! > Allen > > -----Original Message----- > From: ben leinfelder [mailto:leinfel...@nceas.ucsb.edu] > Sent: Friday, November 11, 2011 11:52 AM > To: Hurlbert, Allen Hartley > Cc: kepler-users@kepler-project.org > Subject: Re: [kepler-users] Kepler-R basic question > > Hi Allen! > A few questions for you: > a) can you run any of the getting started demo RExpression workflows that are > included with Kepler? (e.g. 05-LinearRegression.xml) > b) what version of Kepler are you using and on which operating system? > c) could you provide us your sample workflow? > > If you can run R from the command line by simply typing "R", then chances are > good it's already in your PATH. > -ben > > On Nov 11, 2011, at 7:29 AM, Hurlbert, Allen Hartley wrote: > >> Apologies for the basic question, but I'm brand new to Kepler. >> >> Trying to create a basic workflow that reads in some data from a local text >> file (using ReadTable), manipulates it a bit (using an RExpression actor), >> and generates a plot. >> >> However, it seems to be having trouble locating R (error message: "Problem >> writing input. There has been a problem running the R script! It may be due >> to an error in your script, ..., or it may not be on your path and cannot be >> located by Kepler... Because: the pipe has been ended."). >> >> I definitely have R installed on my machine. The referenced section of the >> User Manual, states "the R 'bin' directory must be added to the PATH >> variable on the host computer." I'm not sure how to do this. I can see in >> the Tools>Check System Settings that PATH = env.PATH, but am unsure whether >> this is what I'm supposed to set, and if so, how. >> >> Thanks in advance, >> Allen >> >> _______________________________________________ >> Kepler-users mailing list >> Kepler-users@kepler-project.org >> http://lists.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users > > <VerticalFoliageProfile.kar><Vert_Foliage_Data_20110707.txt>
_______________________________________________ Kepler-users mailing list Kepler-users@kepler-project.org http://lists.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users
