Hi Derik, Thank you for your help. I tried two of my workflows and both of them failed. One failed when copy filename.xml CON: and got an error message "Not enough storage is available to process this command." The other one was successfully copied, but had an exception when I tried the opm2dot command. I have pasted the exception below. I will try a couple of other things later. Thank you again for your help.
Yujia opmToolbox>bin\opm2dot soil.xml soil.dot soil.pdf Exception in thread "main" javax.xml.bind.UnmarshalException: unexpected element (uri:"http://openprovenance.org/model/v1.01.a";, local:"opmGraph"). Expected ele ments are <{http://openprovenance.org/model/opmx#}annotation>,<{ http://openprove nance.org/model/opmx#}label>,<{ http://openprovenance.org/model/opmx#}opmGraph>,< {http://openprovenance.org/model/opmx#}pname>,<{ http://openprovenance.org/model/ opmx#}profile>,<{http://openprovenance.org/model/opmx#}type>,<{ http://openproven ance.org/model/opmx#}value> at com.sun.xml.bind.v2.runtime.unmarshaller.UnmarshallingContext.handleE vent(UnmarshallingContext.java:642) at com.sun.xml.bind.v2.runtime.unmarshaller.Loader.reportError(Loader.ja va:254) at com.sun.xml.bind.v2.runtime.unmarshaller.Loader.reportError(Loader.ja va:249) at com.sun.xml.bind.v2.runtime.unmarshaller.Loader.reportUnexpectedChild Element(Loader.java:116) at com.sun.xml.bind.v2.runtime.unmarshaller.UnmarshallingContext$Default RootLoader.childElement(UnmarshallingContext.java:1049) at com.sun.xml.bind.v2.runtime.unmarshaller.UnmarshallingContext._startE lement(UnmarshallingContext.java:478) at com.sun.xml.bind.v2.runtime.unmarshaller.UnmarshallingContext.startEl ement(UnmarshallingContext.java:459) at com.sun.xml.bind.v2.runtime.unmarshaller.SAXConnector.startElement(SA XConnector.java:148) at org.apache.xerces.parsers.AbstractSAXParser.startElement(Unknown Sour ce) at org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanStartElement(Unkn own Source) at org.apache.xerces.impl.XMLNSDocumentScannerImpl$NSContentDispatcher.s canRootElementHook(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContent Dispatcher.dispatch(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Un known Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source) at org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Sour ce) at com.sun.xml.bind.v2.runtime.unmarshaller.UnmarshallerImpl.unmarshal0( UnmarshallerImpl.java:211) at com.sun.xml.bind.v2.runtime.unmarshaller.UnmarshallerImpl.unmarshal(U nmarshallerImpl.java:184) at javax.xml.bind.helpers.AbstractUnmarshallerImpl.unmarshal(Unknown Sou rce) at javax.xml.bind.helpers.AbstractUnmarshallerImpl.unmarshal(Unknown Sou rce) at javax.xml.bind.helpers.AbstractUnmarshallerImpl.unmarshal(Unknown Sou rce) at javax.xml.bind.helpers.AbstractUnmarshallerImpl.unmarshal(Unknown Sou rce) at org.openprovenance.model.OPMDeserialiser.deserialiseOPMGraph(OPMDeser ialiser.java:70) at org.openprovenance.model.OPMToDot.convert(OPMToDot.java:164) at org.openprovenance.model.OPMToDot.main(OPMToDot.java:48) On Fri, Jun 29, 2012 at 3:11 PM, Derik Barseghian <barsegh...@nceas.ucsb.edu > wrote: > Hi Yujia, > By default provenance records to a local HSQL database using the > "SQL-SPA-8" format, but other options are available. Turn off the default > style of recording by clicking the P button in the toolbar (so it's red), > and dragging to workflow canvas a Provenance Recorder. Double-click on it > to configure it, and change Recording Type to OPM XML. > Derik > > On Jun 29, 2012, at 11:56 AM, Yujia Zhou wrote: > > > Hi Derik, > > > > Thank you very much! I'm trying the OPM toolbox since my workflow is not > a comad workflow. > > I have installed the OPM box and I am able to run its demos. But how can > I make the kepler provenance module record to OPM? > > > > Yujia > > > > On Thu, Jun 28, 2012 at 3:21 PM, Derik Barseghian < > barsegh...@nceas.ucsb.edu> wrote: > > Hi Yujia, > > There are actually two different provenance subsystems available in > Kepler, the released provenance suite, and a provenance system that I > believe was designed to work with the comad add-on(s). > > > > The released provenance suite doesn't have a data visualization > capability, though it does allow recording to OPM, and the OPM toolbox has > a tool to convert these OPM graphs to graphviz, but a co-worker gave that a > try this morning without success. It does seem like it may be possible > though. This is what I would pursue if you are interested. > > > > The comad provenance system has a provenance browser for data > visualization. A screenshot of it is here: > > > https://kepler-project.org/developers/interest-groups/provenance-interest-group/keplerprovbrowserui.png/view?searchterm=provenance%20browser > > You'll see the provenance-browser module in: > https://code.kepler-project.org/code/kepler/trunk/modules/ > > > > I gave it a very quick try just now, and got errors when trying to open > some the included example trace files. I don't think this project is being > maintained, and I believe it is restrictive to comad workflows. I saw this > browser working in the distant past and it looked useful, it would be nice > if it were made to work with the released provenance module. > > > > Derik > > > > > > On Jun 28, 2012, at 6:51 AM, Yujia Zhou wrote: > > > > > Hi, > > > > > > I want to build a provenance diagram in Kepler. I have installed the > provenance module and I am able to query the database successfully. But I'm > wondering if there's a way for Kepler to produce a nice graph to visualize > the data provenance? Thank you very much. > > > > > > Yujia > > > _______________________________________________ > > > Kepler-users mailing list > > > Kepler-users@kepler-project.org > > > http://lists.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users > > > > > >
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