This seems to be fixed, indeed.
I can't reproduce this issue anymore. I'm currently on kernel version 4.4.0-38.
I'm marking this as fixed, then.

** Changed in: linux (Ubuntu)
       Status: Incomplete => Fix Released

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https://bugs.launchpad.net/bugs/1585329

Title:
  Sometimes a black rectangle appears briefly under the mouse cursor

Status in linux package in Ubuntu:
  Fix Released

Bug description:
  I'm on 16.04, using a laptop with Nvidia Optimus (Nvidia driver installed, 
Intel card selected).
  The problem also occurs in a guest session.
  It didn't occur in 14.04.

  Sometimes I see a black rectangle appear for a very brief moment (a flash).
  Horizontally, the rectangle occupies the whole screen.
  Vertically, the rectangle seems to start in the mouse cursor and ends in the 
bottom of the screen.

  The easiest way to reproduce the bug is to open a Gnome terminal, move
  the mouse cursor inside the window and press Alt+Backspace repeatedly.

  WORKAROUND: Switch to the nvidia card.

  ProblemType: Bug
  DistroRelease: Ubuntu 16.04
  Package: compiz 1:0.9.12.2+16.04.20160415-0ubuntu1
  ProcVersionSignature: Ubuntu 4.4.0-22.40-generic 4.4.8
  Uname: Linux 4.4.0-22-generic x86_64
  .tmp.unity_support_test.0:

  ApportVersion: 2.20.1-0ubuntu2
  Architecture: amd64
  CompizPlugins: 
[core,composite,opengl,compiztoolbox,decor,vpswitch,snap,mousepoll,resize,place,move,wall,grid,regex,imgpng,session,gnomecompat,animation,fade,staticswitcher,workarounds,scale,expo,ezoom,dbus]
  CompositorRunning: compiz
  CompositorUnredirectDriverBlacklist: '(nouveau|Intel).*Mesa 8.0'
  CompositorUnredirectFSW: true
  CurrentDesktop: Unity
  Date: Tue May 24 19:44:19 2016
  DistUpgraded: Fresh install
  DistroCodename: xenial
  DistroVariant: ubuntu
  EcryptfsInUse: Yes
  GraphicsCard:
   Intel Corporation Core Processor Integrated Graphics Controller [8086:0046] 
(rev 02) (prog-if 00 [VGA controller])
     Subsystem: Acer Incorporated [ALI] Core Processor Integrated Graphics 
Controller [1025:0488]
   NVIDIA Corporation GF108M [GeForce GT 420M] [10de:0df1] (rev ff) (prog-if ff)
  GsettingsChanges:
   b'org.compiz.core' b'outputs' b"['1366x768+0+0']"
   b'org.compiz.core' b'hsize' b'2'
   b'org.compiz.core' b'active-plugins' b"['core', 'composite', 'opengl', 
'compiztoolbox', 'imgpng', 'snap', 'titleinfo', 'grid', 'vpswitch', 'move', 
'regex', 'copytex', 'place', 'mousepoll', 'session', 'commands', 'wall', 
'resize', 'winrules', 'dbus', 'unitymtgrabhandles', 'animation', 'expo', 
'ezoom', 'fade', 'workarounds', 'scale', 'unityshell']"
   b'org.compiz.core' b'vsize' b'2'
   b'org.compiz.core' b'focus-prevention-level' b'0'
  InstallationDate: Installed on 2016-04-25 (28 days ago)
  InstallationMedia: Ubuntu 16.04 LTS "Xenial Xerus" - Release amd64 
(20160420.1)
  Lsusb:
   Bus 002 Device 002: ID 8087:0020 Intel Corp. Integrated Rate Matching Hub
   Bus 002 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
   Bus 001 Device 003: ID 064e:a219 Suyin Corp. 1.3M WebCam (notebook emachines 
E730, Acer sub-brand)
   Bus 001 Device 002: ID 8087:0020 Intel Corp. Integrated Rate Matching Hub
   Bus 001 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
  MachineType: Acer Aspire 5742G
  PackageArchitecture: all
  ProcKernelCmdLine: BOOT_IMAGE=/vmlinuz-4.4.0-22-generic 
root=UUID=68a53fa4-4cfc-45bc-84de-762947ea37e1 ro locale=pt_PT quiet splash
  SourcePackage: compiz
  UpgradeStatus: No upgrade log present (probably fresh install)
  dmi.bios.date: 08/13/2012
  dmi.bios.vendor: Acer
  dmi.bios.version: V1.30
  dmi.board.asset.tag: Base Board Asset Tag
  dmi.board.name: Aspire 5742G
  dmi.board.vendor: Acer
  dmi.board.version: V1.30
  dmi.chassis.type: 10
  dmi.chassis.vendor: Acer
  dmi.chassis.version: V1.30
  dmi.modalias: 
dmi:bvnAcer:bvrV1.30:bd08/13/2012:svnAcer:pnAspire5742G:pvrV1.30:rvnAcer:rnAspire5742G:rvrV1.30:cvnAcer:ct10:cvrV1.30:
  dmi.product.name: Aspire 5742G
  dmi.product.version: V1.30
  dmi.sys.vendor: Acer
  version.compiz: compiz 1:0.9.12.2+16.04.20160415-0ubuntu1
  version.ia32-libs: ia32-libs N/A
  version.libdrm2: libdrm2 2.4.67-1
  version.libgl1-mesa-dri: libgl1-mesa-dri 11.2.0-1ubuntu2
  version.libgl1-mesa-dri-experimental: libgl1-mesa-dri-experimental N/A
  version.libgl1-mesa-glx: libgl1-mesa-glx 11.2.0-1ubuntu2
  version.xserver-xorg-core: xserver-xorg-core 2:1.18.3-1ubuntu2
  version.xserver-xorg-input-evdev: xserver-xorg-input-evdev 1:2.10.1-1ubuntu2
  version.xserver-xorg-video-ati: xserver-xorg-video-ati 1:7.7.0-1
  version.xserver-xorg-video-intel: xserver-xorg-video-intel 
2:2.99.917+git20160325-1ubuntu1
  version.xserver-xorg-video-nouveau: xserver-xorg-video-nouveau 
1:1.0.12-1build2
  xserver.bootTime: Tue May 24 19:18:29 2016
  xserver.configfile: default
  xserver.errors:

  xserver.logfile: /var/log/Xorg.0.log
  xserver.outputs:
   product id                                 592
   vendor                                     LGD
  xserver.version: 2:1.18.3-1ubuntu2

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