I think this is a system specific issue (it depends on the BIOS).
Quoting Bbswitch's documentation:

On some machines, turning off the card is permanent and the card does
not reappear on subsequents reboots, which can result into the screen
staying black all the time, including the BIOS screen. If it occurs,
first try to shutdown, unplug power cord, remove battery, wait 30s, then
put everything back in and boot. If it's not solved, then the solution
is to reset the BIOS to factory settings. Before executing bbswitch for
the first time, it is therefore recommended to take note of the full key
sequence in the BIOS to do a reset.

source: https://github.com/Bumblebee-Project/bbswitch


On shutdown bbswitch is unloaded and should switch the discrete card back on, 
but apparently this doesn't work on this specific system.

** Changed in: linux (Ubuntu)
       Status: In Progress => Won't Fix

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https://bugs.launchpad.net/bugs/1316095

Title:
  [Nvidia GF117M] 10de:1140 3D Controller disapear after reboot

Status in “linux” package in Ubuntu:
  Won't Fix
Status in “nvidia-prime” package in Ubuntu:
  Invalid

Bug description:
  Unable to switch back to nvidia graphic chip after reboot. Switching
  graphics does not requires reboot, but it does cause issue when user
  had to reboot for some reason, and will not able to use nvidia graphic
  until reboot.

  Step to reproduce: Switch to intel integrated graphic driver first if you 
were not,
  open nvidia settings from dash or use following command:
  sudo prime-select intel && sudo reboot now

  Expected result: Able to switch back to nvidia graphic chip using
  nvidia settings.

  Actuall result: unable to swich back to nvidia driver, the 3D controller 
disapeared in pci list. nvidia-settings will give you empty warning prompt, 
checking from console gives you unkown result:
  sudo prime-select query
  unknown

  WORKAROUND: Shutdown the system then turn on, the 3D controller will
  be back.

  ProblemType: Bug
  DistroRelease: Ubuntu 14.04
  Package: linux-image-3.13.0-24-generic 3.13.0-24.46 [modified: 
boot/vmlinuz-3.13.0-24-generic]
  ProcVersionSignature: Ubuntu 3.13.0-24.46-generic 3.13.9
  Uname: Linux 3.13.0-24-generic x86_64
  ApportVersion: 2.14.1-0ubuntu3
  Architecture: amd64
  AudioDevicesInUse:
   USER        PID ACCESS COMMAND
   /dev/snd/controlC0:  ubuntu     1750 F.... pulseaudio
  CRDA:
   country TW:
    (2402 - 2472 @ 40), (3, 27)
    (5270 - 5330 @ 40), (3, 17), DFS
    (5735 - 5815 @ 40), (3, 30)
  CurrentDesktop: Unity
  Date: Mon May  5 07:02:04 2014
  HibernationDevice: RESUME=UUID=c19bacd6-a604-4c9b-9a21-5d0a2d9cef5c
  InstallationDate: Installed on 2014-04-29 (6 days ago)
  InstallationMedia: Ubuntu 14.04 LTS "Trusty Tahr" - Release amd64 (20140417)
  MachineType: Dell Inc. Vostro 5460
  ProcFB: 0 inteldrmfb
  ProcKernelCmdLine: BOOT_IMAGE=/boot/vmlinuz-3.13.0-24-generic 
root=UUID=15cbb6aa-65e8-4596-be71-2ff7431000be ro rootdelay=60 quiet splash 
initcall_debug
  RelatedPackageVersions:
   linux-restricted-modules-3.13.0-24-generic N/A
   linux-backports-modules-3.13.0-24-generic  N/A
   linux-firmware                             1.127
  SourcePackage: linux
  UpgradeStatus: No upgrade log present (probably fresh install)
  dmi.bios.date: 09/04/2013
  dmi.bios.vendor: Dell Inc.
  dmi.bios.version: A07
  dmi.board.name: TIE3C2
  dmi.board.vendor: Dell Inc.
  dmi.board.version: X00
  dmi.chassis.type: 8
  dmi.chassis.vendor: Dell Inc.
  dmi.chassis.version: 0.1
  dmi.modalias: 
dmi:bvnDellInc.:bvrA07:bd09/04/2013:svnDellInc.:pnVostro5460:pvr:rvnDellInc.:rnTIE3C2:rvrX00:cvnDellInc.:ct8:cvr0.1:
  dmi.product.name: Vostro 5460
  dmi.sys.vendor: Dell Inc.

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