I faced this problem on two different machines (both lightdm + plasma
desktop, on both I happily used this combination on Ubuntu 16.04 but
once I upgraded to 18.04, or soon afterwards, I lost all my groups).

Switched to sddm on both, it helped. So mayhaps lightdm should be
dropped or downgraded, the issue (https://whatstatus.co/guess-ill-die)
is fairly critical (usb doesn't work, sudo has issues, pluggable devices
don't work).

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  User not being initialized correctly on login

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