Hey Anton,

Thank you for the reply.

It is indeed a honeycomb lattice I am working with, and I attempting to 
connecting the two sublattices the honeycomb lattices to create a 
superconducting lead. 

Since the site.pos of honeycomb(electron)-sublattice-a is the same as the 
site.pos of honeycomb(hole)-sublattice-c, should this method not also work for 
this lattice?

Maybe I will just rewrite it in the orbital method.

Regards,
Henry

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