% at_file main.tex:

\section{Section level}
bla bla
bla
\input{sub}
bla
bla bla
...

% at_file sub.tex:
\subsection{Subsection level}
more bla
more bla
...

Currently the main.tex node cannot be a parent of the sub.tex node,
although logically it is. I would like the tree to represent the document 
structure.

I will look at Terry's backlink answer - it may help somewhat, although I 
would prefer if I could nest the @clean nodes: the tree would represent the 
logical structure of the document better.

Edwards solution to put unl's into a latex comment is also interesting. I 
did not realize I can ctrl-click on a unl to get to the node. I suppose 
that would suggest using @file, because that would put the unl 
automatically into the source. I think this is useful, but I would still 
have a tree which does not reflect my document structure.

Another solution would be to have a (non-file) tree reflecting the document 
structure, and use leaf nodes without children for the content. That would 
require an additional level for each content node - suboptimal, but I will 
try that too some time. 

- Josef

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