After dumping and making comparisons between my packets, I'm pretty
sure that the problem is just due me not stripping out the mpegts
headers. How do I go about doing this?

I would need to:

a) Create an AVFormatContext
b) Set its input format to...an mpegts demuxer(?)
c) Set its input buffer (how do I do this?)
d) Pipe data from my from my other AVFormatContext (that strips the
rtp header) into the buffer (how do I do this? lock the buffer?)
e) Call av_read_frame (?)

Can someone give me pointers on doing steps b through d?
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