I just pulled the latest libMesh head and saw a serious performance penalty
that I narrowed down to 445b1c3 with John's help. We've had this test for
several years and it's been relatively stable. It's two overlapping
structured 3D grids, one slightly embedded inside of the other. We are
testing for penetration, not really solving anything.

Input file here:
https://github.com/idaholab/moose/blob/devel/test/tests/geomsearch/3d_penetration_locator/3d_penetration_locator_test.i

Time before 445b1c3: ~5.5 seconds
Time at 445b1c3 ~60-65 seconds

Based on the output, I can tell you that the time is NOT being consumed by
the solve. That "looks" unchanged. I assume that the extra time is
occurring during the mesh setup. I'll let you know more as I get more
information.

Cody
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