Hi,
I am trying to read a large data (11.7GB) with libmesh and use it for my
application. The program runs well when using just one process.
But in parallel (mpirun -n 4), after executing a while, some errors came out:
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably
memory access out of range
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind
<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind>
[0]PETSC ERROR: or try http://valgrind.org <http://valgrind.org/> on GNU/linux
and Apple Mac OS X to find memory corruption errors
[0]PETSC ERROR: likely location of problem given in stack below
[0]PETSC ERROR: --------------------- Stack Frames
------------------------------------
[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
[0]PETSC ERROR: INSTEAD the line number of the start of the function
[0]PETSC ERROR: is given.
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
<http://www.mcs.anl.gov/petsc/documentation/faq.html> for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.7.2, Jun, 05, 2016
[0]PETSC ERROR: ./ptracer on a arch-linux2-c-debug named compute001 by
jiangzhang Fri Jul 1 10:07:07 2016
[0]PETSC ERROR: Configure options
--prefix=/nfs/proj-tpeterka/jiang/opt/petsc-3.7.2 --download-fblaslapack
--with-mpi-dir=/nfs/proj-tpeterka/jiang/libraries/mpich-3.2
[0]PETSC ERROR: #1 User provided function() line 0 in unknown file
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
Anybody know the possible causes?
------------------------------------------------------------------------------
Attend Shape: An AT&T Tech Expo July 15-16. Meet us at AT&T Park in San
Francisco, CA to explore cutting-edge tech and listen to tech luminaries
present their vision of the future. This family event has something for
everyone, including kids. Get more information and register today.
http://sdm.link/attshape
_______________________________________________
Libmesh-devel mailing list
Libmesh-devel@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/libmesh-devel
