>
> Oh, we should probably fix that, which version of the intel compiler
> are you using?
configure:2358: icpc -V >&5
Intel(R) C++ Compiler for applications running on Intel(R) 64, Version
10.1 Build 20080602 Package ID: l_cc_p_10.1.017
Copyright (C) 1985-2008 Intel Corporation. All rights reserved.
>
>
> Could you send us the output of ldd on your executable, and perhaps
> also the output of 'make echo' related to libraries?
Below is the output of ldd first for my profile executable and then
for my debug. Clearly, things are missing for the profile.
setebos $ ldd gen_alpha-pro
linux-vdso.so.1 => (0x00007fffde7fe000)
libz.so.1 => /usr/lib64/libz.so.1 (0x00007f94d61e6000)
libvtkIO.so.5.0 => /usr/lib64/libvtkIO.so.5.0 (0x00007f94d5cda000)
libvtkCommon.so.5.0 => /usr/lib64/libvtkCommon.so.5.0
(0x00007f94d592d000)
libvtkFiltering.so.5.0 => /usr/lib64/libvtkFiltering.so.5.0
(0x00007f94d54b5000)
libpetscsnes.so => not found
libpetscksp.so => not found
libpetscdm.so => not found
libpetscmat.so => not found
libpetscvec.so => not found
libpetsc.so => not found
libX11.so.6 => /usr/lib64/libX11.so.6 (0x00007f94d51b2000)
libmkl_lapack.so =>
/opt/intel/mkl/10.0.3.020/lib/em64t/libmkl_lapack.so
(0x00007f94d4a66000)
/opt/intel/mkl/10.0.3.020/lib/em64t/libmkl_intel_lp64.so
(0x00007f94d4752000)
/opt/intel/mkl/10.0.3.020/lib/em64t/libmkl_intel_thread.so
(0x00007f94d4272000)
/opt/intel/mkl/10.0.3.020/lib/em64t/libmkl_core.so (0x00007f94d408d000)
libguide.so => /opt/intel/mkl/10.0.3.020/lib/em64t/libguide.so
(0x00007f94d647a000)
libpthread.so.0 => /lib/libpthread.so.0 (0x00007f94d3e71000)
libifport.so.5 => /opt/intel/fce/10.1.017/lib/libifport.so.5
(0x00007f94d3d3b000)
libifcore.so.5 => /opt/intel/fce/10.1.017/lib/libifcore.so.5
(0x00007f94d3b36000)
libimf.so => /opt/intel/cce/10.1.017/lib/libimf.so (0x00007f94d37d2000)
libsvml.so => /opt/intel/cce/10.1.017/lib/libsvml.so
(0x00007f94d3647000)
libm.so.6 => /lib/libm.so.6 (0x00007f94d33c6000)
libirc.so => /opt/intel/cce/10.1.017/lib/libirc.so (0x00007f94d328b000)
libdl.so.2 => /lib/libdl.so.2 (0x00007f94d3087000)
libstdc++.so.6 =>
/org/groups/oden/LIBRARIES/GCC/gcc_4.3.1_x86_64_install/lib64/libstdc++.so.6
(0x00007f94d2d80000)
libgcc_s.so.1 =>
/org/groups/oden/LIBRARIES/GCC/gcc_4.3.1_x86_64_install/lib64/libgcc_s.so.1
(0x00007f94d2b6a000)
libc.so.6 => /lib/libc.so.6 (0x00007f94d2808000)
libmpich.so.1.1 =>
/org/groups/oden/LIBRARIES/MPI/mpich2-1.0.7-intel-10.1/lib/libmpich.so.1.1
(0x00007f94d245d000)
libvtkDICOMParser.so.5.0 => /usr/lib64/libvtkDICOMParser.so.5.0
(0x00007f94d223d000)
libpng12.so.0 => /usr/lib64/libpng12.so.0 (0x00007f94d2018000)
libjpeg.so.62 => /usr/lib64/libjpeg.so.62 (0x00007f94d1df5000)
libtiff.so.4 => /usr/lib64/libtiff.so.4 (0x00007f94d1b9c000)
libexpat.so.1 => /usr/lib64/libexpat.so.1 (0x00007f94d1978000)
libvtksys.so.5.0 => /usr/lib64/libvtksys.so.5.0 (0x00007f94d1750000)
libxcb-xlib.so.0 => /usr/lib64/libxcb-xlib.so.0 (0x00007f94d154f000)
libxcb.so.1 => /usr/lib64/libxcb.so.1 (0x00007f94d1334000)
/lib64/ld-linux-x86-64.so.2 (0x00007f94d63fd000)
libintlc.so.5 => /opt/intel/cce/10.1.017/lib/libintlc.so.5
(0x00007f94d11f9000)
libXau.so.6 => /usr/lib64/libXau.so.6 (0x00007f94d0ff7000)
libXdmcp.so.6 => /usr/lib64/libXdmcp.so.6 (0x00007f94d0df2000)
setebos $ ldd gen_alpha-dbg
linux-vdso.so.1 => (0x00007fff753fe000)
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/lib/x86_64-unknown-linux-gnu_dbg/libmesh.so
(0x00007f3d6b798000)
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_dbg/liblaspack.so
(0x00007f3d6b57f000)
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_dbg/libparmetis.so
(0x00007f3d6b33a000)
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_dbg/libmetis.so
(0x00007f3d6b0e3000)
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_dbg/libsfcurves.so
(0x00007f3d6aee1000)
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_dbg/libgzstream.so
(0x00007f3d6acdc000)
libz.so.1 => /usr/lib64/libz.so.1 (0x00007f3d6aac5000)
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_dbg/libgmv.so
(0x00007f3d6a8ab000)
libvtkIO.so.5.0 => /usr/lib64/libvtkIO.so.5.0 (0x00007f3d6a39f000)
libvtkCommon.so.5.0 => /usr/lib64/libvtkCommon.so.5.0
(0x00007f3d69ff2000)
libvtkFiltering.so.5.0 => /usr/lib64/libvtkFiltering.so.5.0
(0x00007f3d69b7a000)
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_dbg/libtetgen.so
(0x00007f3d698ee000)
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_dbg/libtriangle.so
(0x00007f3d696ca000)
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_dbg/libexodusii.so
(0x00007f3d6946b000)
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_dbg/libnetcdf.so
(0x00007f3d69205000)
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_dbg/libnemesis.so
(0x00007f3d68fd8000)
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_dbg/libHilbert.so
(0x00007f3d68dba000)
libpetscsnes.so =>
/org/groups/oden/LIBRARIES/PETSC/petsc-ahawkins/petsc-2.3.3-p13-andrea/lib/intel-10.1-mpich2-1.0.7-cxx-dbg-hypre/libpetscsnes.so
(0x00007f3d68b4c000)
libpetscksp.so =>
/org/groups/oden/LIBRARIES/PETSC/petsc-ahawkins/petsc-2.3.3-p13-andrea/lib/intel-10.1-mpich2-1.0.7-cxx-dbg-hypre/libpetscksp.so
(0x00007f3d68519000)
libpetscdm.so =>
/org/groups/oden/LIBRARIES/PETSC/petsc-ahawkins/petsc-2.3.3-p13-andrea/lib/intel-10.1-mpich2-1.0.7-cxx-dbg-hypre/libpetscdm.so
(0x00007f3d6824d000)
libpetscmat.so =>
/org/groups/oden/LIBRARIES/PETSC/petsc-ahawkins/petsc-2.3.3-p13-andrea/lib/intel-10.1-mpich2-1.0.7-cxx-dbg-hypre/libpetscmat.so
(0x00007f3d67be0000)
libpetscvec.so =>
/org/groups/oden/LIBRARIES/PETSC/petsc-ahawkins/petsc-2.3.3-p13-andrea/lib/intel-10.1-mpich2-1.0.7-cxx-dbg-hypre/libpetscvec.so
(0x00007f3d6789c000)
libpetsc.so =>
/org/groups/oden/LIBRARIES/PETSC/petsc-ahawkins/petsc-2.3.3-p13-andrea/lib/intel-10.1-mpich2-1.0.7-cxx-dbg-hypre/libpetsc.so
(0x00007f3d67511000)
libX11.so.6 => /usr/lib64/libX11.so.6 (0x00007f3d6720e000)
libmkl_lapack.so =>
/opt/intel/mkl/10.0.3.020/lib/em64t/libmkl_lapack.so
(0x00007f3d66ac2000)
/opt/intel/mkl/10.0.3.020/lib/em64t/libmkl_intel_lp64.so
(0x00007f3d667ae000)
/opt/intel/mkl/10.0.3.020/lib/em64t/libmkl_intel_thread.so
(0x00007f3d662ce000)
/opt/intel/mkl/10.0.3.020/lib/em64t/libmkl_core.so (0x00007f3d6d1bd000)
libguide.so => /opt/intel/mkl/10.0.3.020/lib/em64t/libguide.so
(0x00007f3d6615b000)
libpthread.so.0 => /lib/libpthread.so.0 (0x00007f3d65f1a000)
libifport.so.5 => /opt/intel/fce/10.1.017/lib/libifport.so.5
(0x00007f3d65de4000)
libifcore.so.5 => /opt/intel/fce/10.1.017/lib/libifcore.so.5
(0x00007f3d65bdf000)
libimf.so => /opt/intel/cce/10.1.017/lib/libimf.so (0x00007f3d6587b000)
libsvml.so => /opt/intel/cce/10.1.017/lib/libsvml.so
(0x00007f3d656f0000)
libm.so.6 => /lib/libm.so.6 (0x00007f3d6546f000)
libirc.so => /opt/intel/cce/10.1.017/lib/libirc.so (0x00007f3d65334000)
libdl.so.2 => /lib/libdl.so.2 (0x00007f3d65130000)
libstdc++.so.6 =>
/org/groups/oden/LIBRARIES/GCC/gcc_4.3.1_x86_64_install/lib64/libstdc++.so.6
(0x00007f3d64e29000)
libgcc_s.so.1 =>
/org/groups/oden/LIBRARIES/GCC/gcc_4.3.1_x86_64_install/lib64/libgcc_s.so.1
(0x00007f3d64c13000)
libc.so.6 => /lib/libc.so.6 (0x00007f3d648b1000)
libmpich.so.1.1 =>
/org/groups/oden/LIBRARIES/MPI/mpich2-1.0.7-intel-10.1/lib/libmpich.so.1.1
(0x00007f3d64506000)
libintlc.so.5 => /opt/intel/cce/10.1.017/lib/libintlc.so.5
(0x00007f3d643cb000)
libvtkDICOMParser.so.5.0 => /usr/lib64/libvtkDICOMParser.so.5.0
(0x00007f3d641ab000)
libpng12.so.0 => /usr/lib64/libpng12.so.0 (0x00007f3d63f86000)
libjpeg.so.62 => /usr/lib64/libjpeg.so.62 (0x00007f3d63d63000)
libtiff.so.4 => /usr/lib64/libtiff.so.4 (0x00007f3d63b0a000)
libexpat.so.1 => /usr/lib64/libexpat.so.1 (0x00007f3d638e6000)
libvtksys.so.5.0 => /usr/lib64/libvtksys.so.5.0 (0x00007f3d636be000)
libmpichcxx.so.1.1 =>
/org/groups/oden/LIBRARIES/MPI/mpich2-1.0.7-intel-10.1/lib/libmpichcxx.so.1.1
(0x00007f3d63499000)
librt.so.1 => /lib/librt.so.1 (0x00007f3d63290000)
libxcb-xlib.so.0 => /usr/lib64/libxcb-xlib.so.0 (0x00007f3d6308f000)
libxcb.so.1 => /usr/lib64/libxcb.so.1 (0x00007f3d62e74000)
/lib64/ld-linux-x86-64.so.2 (0x00007f3d6d193000)
libXau.so.6 => /usr/lib64/libXau.so.6 (0x00007f3d62c72000)
libXdmcp.so.6 => /usr/lib64/libXdmcp.so.6 (0x00007f3d62a6d000)
I tried "make echo", but it complained. Here is the output from the
linking stage though, is that you were wanting?
Linking gen_alpha-pro...
icpc -I. -DMPICH_SKIP_MPICXX -DNDEBUG -O3 -unroll -w0 -ftz
-par_report0 -openmp_report0 -fPIC -qp -DMPICH_SKIP_MPICXX
ch_no_convection.x86_64-unknown-linux-gnu.pro.o
energies.x86_64-unknown-linux-gnu.pro.o
gen_alpha.x86_64-unknown-linux-gnu.pro.o
tgm.x86_64-unknown-linux-gnu.pro.o -o gen_alpha-pro
-Wl,-rpath,/org/groups/oden/LIBRARIES/GCC/gcc_4.3.1_x86_64_install/lib64
-qp
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/lib/x86_64-unknown-linux-gnu_pro/libmesh.a
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_pro/liblaspack.a
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_pro/libparmetis.a
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_pro/libmetis.a
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_pro/libsfcurves.a
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_pro/libgzstream.a
-lz
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/tecplot/lib/x86_64-unknown-linux-gnu/tecio.a
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_pro/libgmv.a
-Wl,-rpath,/usr/lib64 -L/usr/lib64 -lvtkIO -lvtkCommon -lvtkFiltering
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_pro/libtetgen.a
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_pro/libtriangle.a
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_pro/libexodusii.a
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_pro/libnetcdf.a
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_pro/libnemesis.a
/h1/ahawkins/LIBRARIES/LIBMESH/libmesh-r3512/contrib/lib/x86_64-unknown-linux-gnu_pro/libHilbert.a
-L/org/groups/oden/LIBRARIES/PETSC/petsc-ahawkins/petsc-2.3.3-p13-andrea/lib/intel-10.1-mpich2-1.0.7-cxx-dbg-hypre
-lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetscsnes
-lpetsc -lX11
-Wl,-rpath,/org/groups/oden/LIBRARIES/PETSC/petsc-ahawkins/petsc-2.3.3-p13-andrea/externalpackages/hypre-2.0.0/intel-10.1-mpich2-1.0.7-cxx-dbg-hypre/lib
-L/org/groups/oden/LIBRARIES/PETSC/petsc-ahawkins/petsc-2.3.3-p13-andrea/externalpackages/hypre-2.0.0/intel-10.1-mpich2-1.0.7-cxx-dbg-hypre/lib
-lHYPRE -Wl,-rpath,/opt/intel/mkl/10.0.3.020/lib/em64t
-L/opt/intel/mkl/10.0.3.020/lib/em64t -lmkl_lapack -lmkl -lguide
-lpthread -L/opt/intel/fce/10.1.017/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/
-L/usr/lib/gcc/x86_64-linux-gnu/4.2.4/../../../../lib64 -lifport
-lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s -ldl -fPIC -fPIC
> Thanks,
> --
> John
>
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