Now the examples are running. I have recompiled with another compiler and
it worked.
However, I am facing a new problem while trying to run my code.
bash-3.2$ mpirun -n 1 run-dbg -of results_cyl_r1 -amr 1 -ri 2 -mf
cylinder_refec.xda -dt 1000 wi 100 -gr
av 0 -pc_ty
pe bjacobi -sub_pc_type ilu -sub_pc_factor_levels 1
-sub_pc_factor_shift_nonzero
*** Warning, This code is deprecated, and likely to be removed in future
library versions! src/base/libmesh.C, line 558, compiled Feb 28 2012 at
22:08:02 ***
ERROR: cannot locate specified file:
cylinder_refec.xda
[0] src/mesh/unstructured_mesh.C, line 490, compiled Feb 28 2012 at 22:10:53
terminate called throwing an exception[MacBook-Pro-de-Daniel:00707] ***
Process received signal ***
[MacBook-Pro-de-Daniel:00707] Signal: Abort trap: 6 (6)
[MacBook-Pro-de-Daniel:00707] Signal code: (0)
[MacBook-Pro-de-Daniel:00707] [ 0] 2 libsystem_c.dylib
0x00007fff8b31dcfa _sigtramp + 26
[MacBook-Pro-de-Daniel:00707] [ 1] 3 ???
0x0000000000000000 0x0 + 0
[MacBook-Pro-de-Daniel:00707] [ 2] 4 libc++abi.dylib
0x00007fff8d5ce7bc abort_message + 214
[MacBook-Pro-de-Daniel:00707] [ 3] 5 libc++abi.dylib
0x00007fff8d5cbfcf _Z17default_terminatev + 28
[MacBook-Pro-de-Daniel:00707] [ 4] 6 run-dbg
0x000000010ed8f54d _ZN7libMesh25libmesh_terminate_handlerEv + 13
[MacBook-Pro-de-Daniel:00707] [ 5] 7 libc++abi.dylib
0x00007fff8d5cc001 _Z19safe_handler_callerPFvvE + 11
[MacBook-Pro-de-Daniel:00707] [ 6] 8 libc++abi.dylib
0x00007fff8d5cc05c __cxa_bad_typeid + 0
[MacBook-Pro-de-Daniel:00707] [ 7] 9 libc++abi.dylib
0x00007fff8d5cd152
_Z23__gxx_exception_cleanup19_Unwind_Reason_CodeP17_Unwind_Exception + 0
[MacBook-Pro-de-Daniel:00707] [ 8] 10 run-dbg
0x000000010f3e4145 _ZN7libMesh16UnstructuredMesh4readERKSsPNS_8MeshDataEb +
2195
[MacBook-Pro-de-Daniel:00707] [ 9] 11 run-dbg
0x000000010ecf8746 main + 4182
[MacBook-Pro-de-Daniel:00707] [10] 12 run-dbg
0x000000010ece0ba4 start + 52
[MacBook-Pro-de-Daniel:00707] *** End of error message ***
--------------------------------------------------------------------------
mpirun noticed that process rank 0 with PID 707 on node
MacBook-Pro-de-Daniel.local exited on signal 6 (Abort trap: 6).
--------------------------------------------------------------------------
Any ideas?
Regards,
Daniel.
On Mon, Feb 27, 2012 at 9:12 PM, Daniel Vasconcelos <
[email protected]> wrote:
> Configure complains that --disable-fparser is a unrecognized option.
>
>
> On Mon, Feb 27, 2012 at 9:09 PM, Daniel Vasconcelos <
> [email protected]> wrote:
>
>> Weird, now it passed but I used the following configure:
>>
>> ./configure --enable-mpi --enable-second --enable-exodus
>> --enable-shared=no
>>
>> I will try what you said.
>>
>> On Mon, Feb 27, 2012 at 9:00 PM, Roy Stogner <[email protected]>wrote:
>>
>>>
>>> On Mon, 27 Feb 2012, Daniel Vasconcelos wrote:
>>>
>>> With the head version of libmesh I am having problems when trying to
>>>> make it:
>>>>
>>>
>>> Also weird, but let's look at the possible problem in libMesh first and
>>> get
>>> back to the possible problem in a third party package later. Try
>>> adding "--disable-fparser" to your configure line to disable building
>>> fparser.
>>> ---
>>> Roy
>>>
>>>
>>> ------------------------------**----------------
>>>> ------- Building Contributed Packages --------
>>>> ------------------------------**----------------
>>>>
>>>> --- Building fparser -------------------------
>>>> Compiling C++ (in debug mode) util/bytecoderules_parser.cc..**.
>>>> Linking (in debug mode) util/bytecoderules_parser.x86_**
>>>> 64-apple-darwin11.3.0.dbg.o...
>>>> Compiling C++ (in debug mode) util/cpp_compress.cc...
>>>> Compiling C++ (in debug mode) util/cpp_compress_main.cc...
>>>> Linking (in debug mode) util/cpp_compress.x86_64-**
>>>> apple-darwin11.3.0.dbg.o...
>>>> Creating Bytecode (in debug mode) util/bytecoderules_parser...
>>>> Compiling C++ (in debug mode) fparser.cc...
>>>> In file included from fparser.cc:1648:0:
>>>> extrasrc/fp_opcode_add.inc:58:**0: error: unterminated #if
>>>>
>>>
>>
>
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