On Mon, Apr 16, 2012 at 5:45 PM, Jens Lohne Eftang <[email protected]> wrote: > On 04/16/2012 07:31 PM, John Peterson wrote: >> >> On Mon, Apr 16, 2012 at 5:23 PM, Jens Lohne Eftang<[email protected]> >> wrote: >>> >>> Thanks for you reply. >>> >>> the libmesh_LIBS output has references to mpi, -lmpich and -lmpichf90. >>> Would >>> it help to post the whole output? >> >> Are they preceded by something like -Wl,-rpath, in the libmesh_LIBS >> output? >> >> Perhaps something like: >> >> -Wl,-rpath,/home/eftang/fem_software/mpich2-install/lib > > Yes, for example ... > -Wl,-rpath,/home/eftang/fem_software/mpich2-install/lib > -L/home/eftang/fem_software/mpich2-install/lib > -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.4.6 > -L/usr/lib/gcc/x86_64-linux-gnu/4.4.6 -Wl,-rpath,/usr/lib/x86_64-linux-gnu > -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu > -L/lib/x86_64-linux-gnu -ldl -lmpich -lopa -lmpl -lrt -lpthread -lgcc_s > -lmpichf90 -lgfortran ... > > it's a rather long output though... > > >> ? >> >> What is the output if you run 'nm' on the MPI shared libraries of your >> system, and grep for mpi_bcast_ ? > > nm * | grep mpi_bcast_ in the mpich2-install/lib folder returns > > 0000000000000000 T mpi_bcast_ > 0000000000000000 W mpi_bcast__ > 00000000000164f0 T mpi_bcast_ > 00000000000164f0 W mpi_bcast__ > 00000000000164f0 T mpi_bcast_
Hmm... unfortunately I don't see anything that's obviously wrong yet. Is there any chance you have changed/upgraded compilers between the time you built built mpich/petsc and the time you tried to build libmesh? One other thing you might try: have petsc download mpich along with everything else instead of using your existing mpich install... -- John ------------------------------------------------------------------------------ Better than sec? Nothing is better than sec when it comes to monitoring Big Data applications. Try Boundary one-second resolution app monitoring today. Free. http://p.sf.net/sfu/Boundary-dev2dev _______________________________________________ Libmesh-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/libmesh-users
