I hit this as well and as best I can tell, this is due to a known (?) issue with shared libraries on os x. All other examples should run fine. Note that this doesn't occur on the automake branch.
On Sep 18, 2012, at 12:43 AM, Paul Hui Sun <[email protected]> wrote: > Without specifying any options, the problem I had didn't occur any more, the > examples seem to be built all fine, until this one below. I think it might be > because that I have run ./configure with some certain environmental variables > before, and they were recalled somehow. > > > *************************************************************** > * Running Example ./miscellaneous_ex6-opt > *************************************************************** > > Triangulating an L-shaped domain with holes > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, > probably memory access out of range > [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger > [0]PETSC ERROR: or see > http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[0]PETSC > ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find > memory corruption errors > [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and > run > [0]PETSC ERROR: to get more information on the crash. > [0]PETSC ERROR: --------------------- Error Message > ------------------------------------ > [0]PETSC ERROR: Signal received! > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 6, Wed Jan 11 09:28:45 CST > 2012 > [0]PETSC ERROR: See docs/changes/index.html for recent updates. > [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [0]PETSC ERROR: See docs/index.html for manual pages. > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: ./miscellaneous_ex6-opt on a darwin-op named new-host-2.home > by Paul Mon Sep 17 22:37:13 2012 > [0]PETSC ERROR: Libraries linked from > /Users/Paul/sfw/petsc/3.2-p6/darwin-opt/lib > [0]PETSC ERROR: Configure run at Fri Sep 14 12:20:58 2012 > [0]PETSC ERROR: Configure options --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 > --FOPTFLAGS=-O3 --CC=/Users/Paul/sfw/darwin/openmpi/1.4.3/bin/mpicc > --CXX=/Users/Paul/sfw/darwin/openmpi/1.4.3/bin/mpicxx > --FC=/Users/Paul/sfw/darwin/openmpi/1.4.3/bin/mpif90 > --LDFLAGS="-L/Users/Paul/sfw/darwin/openmpi/1.4.3/lib > -Wl,-rpath,/Users/Paul/sfw/darwin/openmpi/1.4.3/lib" > --with-shared-libraries=0 --with-dynamic-libraries=0 --with-default-arch=0 > --PETSC_ARCH=darwin-opt --with-debugging=0 --with-c++-support=1 > --with-hypre=1 --download-hypre=1 > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown > file > -------------------------------------------------------------------------- > MPI_ABORT was invoked on rank 0 in communicator MPI COMMUNICATOR 3 DUP FROM 0 > with errorcode 59. > > NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. > You may or may not see output from other processes, depending on > exactly when Open MPI kills them. > -------------------------------------------------------------------------- > make[2]: *** [run] Error 59 > make[1]: *** [run] Error 1 > make: *** [run_examples] Error 2 > > > On Sep 17, 2012, at 10:27 PM, "Paul T. Bauman" <[email protected]> wrote: > >> On Tue, Sep 18, 2012 at 12:22 AM, Paul Hui Sun <[email protected]> wrote: >> CC=/usr/local/gfortran/bin/gcc CXX=/usr/local/gfortran/bin/g++ >> FC=gfortran F77=gfortran METHOD=opt >> >> libMesh doesn't need fortran. Try just doing: ./configure and see if you >> can build and run the examples. If you aren't setting CC/CXX, you should be >> using the native CLang compiler that comes with XCode. > ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Libmesh-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/libmesh-users
