Thanks for all the answers.

John Peterson <[email protected]> writes:

> On Thu, Apr 4, 2013 at 8:50 AM, Martin Luethi <[email protected]> wrote:
>> The subject says it all: how are PETSC options set at the command line?
>> I don't see anything setting for example
>>
>> ./example-opt -log_summary
>
> So if you're running examples, you can do
>
> LIBMESH_OPTIONS="-ksp_monitor -pc_type lu" ./run
>
> in the example directory, and it will pick up those options...

Yes, for example examples/fem_system/ex1

If I try out the above line, the script nicely echoes the options, but
nothing happens.

This is with fairly recent Petsc (3.3_p6) and Libmesh 
2f856d8e4bd03018347de0d24697fa1eb1a73456 (20 March 2013).

Might this be that options are eaten by GetPot?

I just tried the Petsc examples, and there  log_summary and ksp_monitor
work nicely. I'll try upgrading and recompiling Libmesh, hoping this helps.

Thanks, Martin

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