Dear all,
compiling libMesh on my system I get the following error
CXXLD getpot_parse-opt
Undefined symbols for architecture x86_64:
"Hilbert::coordsToIndex(CFixBitVec const*, int, int, CBigBitVec&)",
referenced from:
Hilbert::HilbertIndices (anonymous
namespace)::get_hilbert_index<libMesh::Elem>(libMesh::Elem const*,
libMesh::MeshTools::BoundingBox const&)in
libmesh_opt.a(libmesh_opt_la-mesh_communication_global_indices.o)
Hilbert::HilbertIndices (anonymous
namespace)::get_hilbert_index<libMesh::Node>(libMesh::Node const*,
libMesh::MeshTools::BoundingBox const&)in
libmesh_opt.a(libmesh_opt_la-mesh_communication_global_indices.o)
(anonymous namespace)::get_hilbert_index(libMesh::Point const&,
libMesh::MeshTools::BoundingBox const&)in
libmesh_opt.a(libmesh_opt_la-mesh_communication_global_indices.o)
ld: symbol(s) not found for architecture x86_64
collect2: ld returned 1 exit status
make[1]: *** [getpot_parse-opt] Error 1
make: *** [all-recursive] Error 1
Any idea?
It works if I configure with --disable-libHilbert
This is the configure output
digihabia:libmesh-0.9.1 ihabia$ ./configure
--prefix=/Users/ihabia/src2/libmesh-0.9.1/libmesh_build/
--with-methods="opt" --enable-static --disable-shared
--with-mpi=/usr/local/ --disable-fortran --disable-second --disable-amr
---------------------------------------------
----------- Configuring libMesh -------------
---------------------------------------------
checking build system type... x86_64-apple-darwin11.4.2
checking host system type... x86_64-apple-darwin11.4.2
checking target system type... x86_64-apple-darwin11.4.2
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... build-aux/install-sh -c -d
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking how to create a ustar tar archive... gnutar
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... yes
checking for src/base/libmesh.C... yes
checking for style of include used by make... GNU
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether mpicxx accepts -g... yes
checking dependency style of mpicxx... gcc3
<<< C++ compiler is gcc-4.2 >>>
<<< C++ compiler is built by Apple >>>
checking whether we are using the GNU C compiler... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to accept ISO C89... none needed
checking dependency style of mpicc... gcc3
>>> Disabling Fortran language support per user request <<<
<< Disabling GLIBCXX debugging on Darwin >>>
<<< Configuring libMesh with methods "opt" >>>
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by mpicc...
/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld
checking if the linker
(/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) is GNU ld... no
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm
checking the name lister (/usr/bin/nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 196608
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-apple-darwin11.4.2 file names to
x86_64-apple-darwin11.4.2 format... func_convert_file_noop
checking how to convert x86_64-apple-darwin11.4.2 file names to toolchain
format... func_convert_file_noop
checking for /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld
option to reload object files... -r
checking for objdump... no
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... no
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm output from mpicc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking for dsymutil... dsymutil
checking for nmedit... nmedit
checking for lipo... lipo
checking for otool... otool
checking for otool64... no
checking for -single_module linker flag... yes
checking for -exported_symbols_list linker flag... yes
checking for -force_load linker flag... yes
checking how to run the C preprocessor... mpicc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if mpicc supports -fno-rtti -fno-exceptions... no
checking for mpicc option to produce PIC... -fno-common -DPIC
checking if mpicc PIC flag -fno-common -DPIC works... yes
checking if mpicc static flag -static works... no
checking if mpicc supports -c -o file.o... yes
checking if mpicc supports -c -o file.o... (cached) yes
checking whether the mpicc linker
(/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports
shared libraries... yes
checking dynamic linker characteristics... darwin11.4.2 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... mpicxx -E
checking for ld used by mpicxx...
/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld
checking if the linker
(/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) is GNU ld... no
checking whether the mpicxx linker
(/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports
shared libraries... yes
checking for mpicxx option to produce PIC... -fno-common -DPIC
checking if mpicxx PIC flag -fno-common -DPIC works... yes
checking if mpicxx static flag -static works... no
checking if mpicxx supports -c -o file.o... yes
checking if mpicxx supports -c -o file.o... (cached) yes
checking whether the mpicxx linker
(/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports
shared libraries... yes
checking dynamic linker characteristics... darwin11.4.2 dyld
checking how to hardcode library paths into programs... immediate
checking Major version... 0
checking Minor version... 9
checking Point version... 1
checking whether ln -s works... yes
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for perl... /usr/bin/perl
checking for pkg-config... no
checking whether the compiler implements namespaces... yes
---------------------------------------------
------- Configuring compiler features -------
---------------------------------------------
<<< Default floating point is double precision (double) >>>
checking for C/C++ restrict keyword... __restrict
<<< Configuring library with getpwuid >>>
<<< Configuring library with exception throwing support >>>
checking size of short int... 2
checking size of int... 4
checking size of unsigned int... 4
checking size of long int... 8
checking size of float... 4
checking size of double... 8
checking size of void *... 8
checking size of function_pointer... 8
checking whether the compiler supports Run-Time Type Identification... yes
checking getopt.h usability... yes
checking getopt.h presence... yes
checking for getopt.h... yes
checking csignal usability... yes
checking csignal presence... yes
checking for csignal... yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking whether the compiler has locale... yes
checking whether the compiler has stringstream... yes
checking fenv.h usability... yes
checking fenv.h presence... yes
checking for fenv.h... yes
checking xmmintrin.h usability... yes
checking xmmintrin.h presence... yes
checking for xmmintrin.h... yes
checking whether the compiler supports std::unordered_multimap... no
checking whether the compiler supports std::tr1::unordered_multimap... yes
checking whether the compiler supports std::unordered_map... no
checking whether the compiler supports std::tr1::unordered_map... yes
checking whether the compiler supports std::unordered_set... no
checking whether the compiler supports std::tr1::unordered_set... yes
checking for dlfcn.h... (cached) yes
checking whether the compiler supports GCC C++ ABI name demangling... yes
checking whether the c++ compiler supports glibc backtrace... yes
checking for OpenMP flag of C++ compiler... -fopenmp
<<< Configuring library with OpenMP support >>>
---------------------------------------------
----- Done configuring compiler features ----
---------------------------------------------
---------------------------------------------
----- Configuring core library features -----
---------------------------------------------
>>> WARNING: using a legacy option <<<
>>> Configuring library to enable a default libMesh::CommWorld <<<
<<< Configuring library to require ``include "libmesh/etc.h"'' style >>>
<<< Configuring library to keep names in libMesh namespace >>>
configuring size of boundary_id... 2
configuring size of dof_id... 4
configuring size of processor_id... 2
configuring size of subdomain_id... 2
<<< Configuring library with variational smoother support >>>
<<< Configuring library with periodic BC support >>>
<<< Configuring library with Dirichlet constraint support >>>
<<< Configuring library to use ghosted local vectors >>>
<<< Configuring library with higher order p-FEM shapes >>>
checking rpc/rpc.h usability... yes
checking rpc/rpc.h presence... yes
checking for rpc/rpc.h... yes
checking for xdrstdio_create... yes
<<< Configuring library with XDR support >>>
<<< Configuring library with real number support >>>
<<< Configuring library with reference counting support >>>
<<< Configuring library example suite support >>>
---------------------------------------------
-- Done configuring core library features ---
---------------------------------------------
---------------------------------------------
----- Configuring for optional packages -----
---------------------------------------------
checking for boostlib >= 1.20.0... yes
<<< Using external boost installation >>>
checking /Users/ihabia/src2/petsc-3.3-p7//include/petscversion.h
usability... yes
checking /Users/ihabia/src2/petsc-3.3-p7//include/petscversion.h
presence... yes
checking for /Users/ihabia/src2/petsc-3.3-p7//include/petscversion.h... yes
<<< Configuring library with MPI from PETSC config >>>
<<< Configuring library with PETSc version 3.3.0 support >>>
checking /usr/lib/slepc/include/slepcversion.h usability... no
checking /usr/lib/slepc/include/slepcversion.h presence... no
checking for /usr/lib/slepc/include/slepcversion.h... no
<<< Invalid "$SLEPC_DIR" detected (slepcversion.h not found). SLEPc
disabled. >>>
checking /arch-darwin-c-opt/include/slepcconf.h usability... no
checking /arch-darwin-c-opt/include/slepcconf.h presence... no
checking for /arch-darwin-c-opt/include/slepcconf.h... no
checking /usr/include/tbb/task_scheduler_init.h usability... no
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checking for /usr/include/tbb/task_scheduler_init.h... no
checking whether the compiler supports std::thread... no
checking whether TBB supports tbb::tbb_thread... no
<<< Configuring library with Laspack support >>>
<<< Configuring library with SFC support >>>
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for gzopen in -lz... yes
<<< Configuring library with gzstreams support >>>
checking for bzip2... bzip2
checking for bunzip2... bunzip2
<<< Using bzip2/bunzip2 for writing/reading compressed .bz2 files >>>
checking for xz... none
checking X11/Intrinsic.h usability... yes
checking X11/Intrinsic.h presence... yes
checking for X11/Intrinsic.h... yes
<<< Configuring library with Tecplot TecIO support >>>
<<< Configuring library with Metis support >>>
<<< Configuring library with Parmetis support >>>
checking for doxygen... no
<<< Configuring library with Tetgen support >>>
<<< Configuring library with Triangle support >>>
<<< Configuring library with GMV support >>>
checking /vtkConfigure.h usability... no
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VTK header files not found!
checking /usr/include/Eigen/Eigen usability... no
checking /usr/include/Eigen/Eigen presence... no
checking for /usr/include/Eigen/Eigen... no
<<< external Eigen header files not found, using Eigen from ./contrib >>>
checking Eigen/Dense usability... yes
checking Eigen/Dense presence... yes
checking for Eigen/Dense... yes
checking Eigen/Sparse usability... yes
checking Eigen/Sparse presence... yes
checking for Eigen/Sparse... yes
checking for eigen - version >= 3.1.2... yes
<<< Configuring library with Eigen support >>>
checking /usr/include/glpk.h usability... no
checking /usr/include/glpk.h presence... no
checking for /usr/include/glpk.h... no
GLPK header files not found!
<<< Configuring library with NetCDF version 4 support >>>
defining -DNOT_NETCDF4 for our Exodus build
<<< Configuring library with Exodus version v5.22 support >>>
<<< Configuring library with Nemesis version v5.22 support >>>
<<< Configuring library with libHilbert support >>>
>>> Disabling fparser optimization on darwin11.4.2 <<<
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for bison... bison -y
<<< Configuring library with fparser support (release version) >>>
checking for cppunit-config... no
checking for Cppunit - version >= 1.10.0... no
<<< Configuring library with nanoflann KDtree support >>>
----------------------------------------------
--- Done configuring for optional packages ---
----------------------------------------------
removing duplicate include paths...
removing duplicate libraries...
checking for git... /usr/bin/git
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating include/Makefile
config.status: creating include/libmesh/Makefile
config.status: creating contrib/Makefile
config.status: creating contrib/utils/Makefile
config.status: creating contrib/utils/Make.common
config.status: creating tests/Makefile
config.status: creating doc/Doxyfile
config.status: creating contrib/utils/libmesh.pc
config.status: creating contrib/utils/libmesh-opt.pc
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config.status: creating contrib/utils/libmesh-prof.pc
config.status: creating contrib/utils/libmesh-oprof.pc
config.status: creating contrib/bin/libmesh-config
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config.status: creating contrib/metis/Makefile
config.status: creating contrib/parmetis/Makefile
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config.status: creating contrib/triangle/Makefile
config.status: creating contrib/gmv/Makefile
config.status: creating contrib/eigen/eigen/Makefile
config.status: creating contrib/netcdf/v3/Makefile
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config.status: creating contrib/fparser/Makefile
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config.status: creating examples/introduction/introduction_ex1/Makefile
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config.status: creating examples/subdomains/subdomains_ex1/Makefile
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examples/systems_of_equations/systems_of_equations_ex1/Makefile
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config.status: include/libmesh_config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
=== configuring in contrib/netcdf/v4
(/Users/ihabia/src2/libmesh-0.9.1/contrib/netcdf/v4)
configure: running /bin/sh ./configure --disable-option-checking
'--prefix=/Users/ihabia/src2/libmesh-0.9.1/libmesh_build'
'--with-methods=opt' '--enable-static' '--disable-shared'
'--with-mpi=/usr/local/' '--disable-fortran' '--disable-second'
'--disable-amr' 'CXX=mpicxx' 'CC=mpicc'
'PETSC_DIR=/Users/ihabia/src2/petsc-3.3-p7/' 'PETSC_ARCH=arch-darwin-c-opt'
'--disable-netcdf-4' '--disable-testsets' 'CXX=mpicxx' 'CC=mpicc' 'F77=no'
'FC=no' 'CPPFLAGS= ' 'LIBS= ' --cache-file=/dev/null --srcdir=.
configure: netCDF 4.2.1.1
checking build system type... x86_64-apple-darwin11.4.2
checking host system type... x86_64-apple-darwin11.4.2
checking target system type... x86_64-apple-darwin11.4.2
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... ./install-sh -c -d
checking for gawk... no
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checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
configure: checking user options
checking whether a win32 DLL is desired... no
checking whether a NCIO_MINBLOCKSIZE was specified... 256
checking if fsync support is enabled... yes
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checking whether a default chunk size in bytes was specified... 4194304
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was specified... 1009
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configure: finding C compiler
checking for gcc... (cached) mpicc
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checking for mpicc option to accept ISO C89... (cached) none needed
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configure: setting up libtool
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/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld
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checking whether ln -s works... yes
checking the maximum length of command line arguments... 196608
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-apple-darwin11.4.2 file names to
x86_64-apple-darwin11.4.2 format... func_convert_file_noop
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format... func_convert_file_noop
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checking command to parse /usr/bin/nm output from mpicc object... ok
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checking for dlfcn.h... yes
checking for objdir... .libs
checking if mpicc supports -fno-rtti -fno-exceptions... no
checking for mpicc option to produce PIC... -fno-common -DPIC
checking if mpicc PIC flag -fno-common -DPIC works... yes
checking if mpicc static flag -static works... no
checking if mpicc supports -c -o file.o... yes
checking if mpicc supports -c -o file.o... (cached) yes
checking whether the mpicc linker
(/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports
shared libraries... yes
checking dynamic linker characteristics... darwin11.4.2 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: finding other utilities
checking for doxygen... no
configure: WARNING: Doxygen not found - documentation will not be built
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
configure: displaying some results
checking CPPFLAGS...
checking CC CFLAGS... mpicc -g -O2
checking type mpicc... mpicc is hashed (/usr/local/bin/mpicc)
checking CXX... mpicxx
checking CXXFLAGS...
checking type mpicxx... mpicxx is /usr/local/bin/mpicxx
checking FC... no
checking FFLAGS...
./configure: line 14294: type: no: not found
checking type no...
checking F90... unset
checking AR... ar
checking AR_FLAGS... cru
checking type ar... ar is hashed (/usr/bin/ar)
checking NM... /usr/bin/nm
checking NMFLAGS...
configure: checking types, headers, and functions
checking for stdlib.h... (cached) yes
checking for sys/types.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for ANSI C header files... (cached) yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking whether time.h and sys/time.h may both be included... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking malloc.h usability... no
checking malloc.h presence... no
checking for malloc.h... no
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking getopt.h usability... yes
checking getopt.h presence... yes
checking for getopt.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for vprintf... yes
checking for _doprnt... no
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for strlcat... yes
checking for strerror... yes
checking for snprintf... yes
checking for strchr... yes
checking for strrchr... yes
checking for strcat... yes
checking for strcpy... yes
checking for strdup... yes
checking for strcasecmp... yes
checking for strtod... yes
checking for strtoll... yes
checking for strtoull... yes
checking for strstr... yes
checking for mkstemp... yes
checking for rand... yes
checking for getrlimit... yes
checking for gettimeofday... yes
checking for fsync... yes
checking for MPI_Comm_f2c... no
checking whether in-memory files are enabled... yes
checking for memmove... yes
checking for getpagesize... yes
checking for sysconf... yes
checking whether mmap is enabled for in-memory files... no
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getpagesize... (cached) yes
checking for working mmap... yes
checking for mremap... no
mmap function or mremap function is not available: disabling mmap
checking for size_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether isnan is declared... yes
checking whether isinf is declared... yes
checking whether isfinite is declared... yes
checking whether signbit is declared... yes
checking for struct stat.st_blksize... yes
checking for IEEE floating point format... yes
checking for size_t... (cached) yes
checking for off_t... yes
checking for ssize_t... yes
checking for ptrdiff_t... yes
checking for uchar... no
checking for longlong... no
checking whether char is unsigned... no
checking whether byte ordering is bigendian... no
checking size of short... 2
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of float... 4
checking size of double... 8
checking size of off_t... 8
checking size of size_t... 8
checking for library containing deflate... -lz
checking for floor in -lm... yes
checking what to call the output of the ftpbin target...
binary-netcdf-4.2.1.1_nc3.tar no mpicxx
checking binary distribution directory... /home/ftp/pub/binary/dummy_system
checking value of LIBS... -lm -lz -lcurl
configure: generating header files and makefiles
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating nc-config
config.status: creating netcdf.pc
config.status: creating include/Makefile
config.status: creating h5_test/Makefile
config.status: creating man4/Makefile
config.status: creating man4/images/Makefile
config.status: creating libsrc/Makefile
config.status: creating libsrc4/Makefile
config.status: creating nctest/Makefile
config.status: creating nc_test4/Makefile
config.status: creating nc_test/Makefile
config.status: creating ncdump/Makefile
config.status: creating ncgen3/Makefile
config.status: creating ncgen/Makefile
config.status: creating examples/Makefile
config.status: creating examples/C/Makefile
config.status: creating examples/CDL/Makefile
config.status: creating oc/Makefile
config.status: creating libdap2/Makefile
config.status: creating libcdmr/Makefile
config.status: creating librpc/Makefile
config.status: creating libdispatch/Makefile
config.status: creating liblib/Makefile
config.status: creating ncdump/cdl4/Makefile
config.status: creating ncdump/expected4/Makefile
config.status: creating ncdap_test/Makefile
config.status: creating ncdap_test/testdata3/Makefile
config.status: creating ncdap_test/expected3/Makefile
config.status: creating ncdap_test/expected4/Makefile
config.status: creating ncdap_test/expectremote3/Makefile
config.status: creating ncdap_test/expectremote4/Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
----------------------------------- SUMMARY
-----------------------------------
Package version.................... : libmesh-0.9.1
C++ compiler type.................. : gcc4.2
C++ compiler....................... : mpicxx
C compiler......................... : mpicc
Fortran compiler................... : no
Build Methods...................... : opt
CPPFLAGS...(opt)................... : -DNDEBUG
CXXFLAGS...(opt)................... : -O2 -felide-constructors
-funroll-loops -fstrict-aliasing -Wdisabled-optimization -fopenmp
CFLAGS.....(opt)................... : -O2 -funroll-loops -fstrict-aliasing
-fopenmp
Install dir........................ :
/Users/ihabia/src2/libmesh-0.9.1/libmesh_build
Build user......................... : ihabia
Build host......................... : digihabia.local
Build architecture................. : x86_64-apple-darwin11.4.2
Git revision....................... : external
Library Features:
adaptive mesh refinement......... : no
complex variables................ : no
example suite.................... : yes
ghosted vectors.................. : yes
high-order shape functions....... : yes
id size (boundaries)............. : 2 bytes
id size (dofs)................... : 4 bytes
id size (processors)............. : 2 bytes
id size (subdomains)............. : 2 bytes
infinite elements................ : no
Dirichlet constraints............ : yes
node constraints................. : no
parallel mesh.................... : no
performance logging.............. : no
periodic boundary conditions..... : yes
reference counting............... : yes
shape function 2nd derivatives... : no
stack trace files................ : no
variational smoother............. : yes
xdr binary I/O................... : yes
providing libMesh::CommWorld..... : yes ***LEGACY FEATURE***
Optional Packages:
boost............................ : yes
cppunit.......................... : no
eigen............................ : yes
exodus........................... : yes
version....................... : v5.22
fparser.......................... : yes
build from version............ : release
glpk............................. : no
gmv.............................. : yes
gzstream......................... : yes
hdf5............................. : no
laspack.......................... : yes
libhilbert....................... : yes
metis............................ : yes
mpi.............................. : yes
nanoflann........................ : yes
nemesis.......................... : yes
version....................... : v5.22
netcdf........................... : yes
version....................... : 4
openmp........................... : yes
parmetis......................... : yes
petsc............................ : yes
version....................... : 3.3.0
sfcurves......................... : yes
slepc............................ : no
tbb.............................. : no
c++ threads...................... : no
c++ rtti ........................ : yes
tecio............................ : yes
tecplot...(vendor binaries)...... : no
tetgen........................... : yes
triangle......................... : yes
trilinos......................... : no
vtk.............................. : no
libmesh_optional_INCLUDES........ :
-I/Users/ihabia/src2/petsc-3.3-p7/include
-I/Users/ihabia/src2/petsc-3.3-p7/arch-darwin-c-opt/include
-I/usr/local/include
libmesh_optional_LIBS............ : -lz
-L/Users/ihabia/src2/petsc-3.3-p7//arch-darwin-c-opt/lib
-L/Users/ihabia/src2/petsc-3.3-p7/arch-darwin-c-opt/lib -lpetsc -lpthread
-lf2clapack -lf2cblas -ldl
-------------------------------------------------------------------------------
Configure complete, now type 'make' and then 'make install'.
---------------------------------------------
--------- Done Configuring libMesh ----------
---------------------------------------------
Thanks.
Lorenzo
------------------------------------------------------------------------------
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