Are you sure you've compiled PETSc in complex mode?
On Fri, Aug 16, 2013 at 8:54 AM, Jens Lohne Eftang <[email protected]>wrote: > I'm using gcc 4.7 > > I tried --with-clanguage=cxx for PETSc, but that did not resolve > everything. > > Now I get another error message during libmesh compilation: > > > CXX src/numerics/libmesh_dbg_la-dense_matrix_blas_lapack.lo > src/numerics/dense_matrix_blas_lapack.C: In instantiation of 'void > libMesh::DenseMatrix<T>::_multiply_blas(const > libMesh::DenseMatrixBase<T>&, > libMesh::DenseMatrix<T>::_BLAS_Multiply_Flag) [with T = double]': > src/numerics/dense_matrix_blas_lapack.C:760:98: required from here > src/numerics/dense_matrix_blas_lapack.C:174:3: error: cannot convert > 'double*' to 'PetscScalar* {aka std::complex<double>*}' for argument '6' > to 'void zgemm_(const char*, const char*, PetscBLASInt*, PetscBLASInt*, > PetscBLASInt*, PetscScalar*, PetscScalar*, PetscBLASInt*, PetscScalar*, > PetscBLASInt*, PetscScalar*, PetscScalar*, PetscBLASInt*)' > src/numerics/dense_matrix_blas_lapack.C: In instantiation of 'void > libMesh::DenseMatrix<T>::_lu_decompose_lapack() [with T = double]': > src/numerics/dense_matrix_blas_lapack.C:761:55: required from here > src/numerics/dense_matrix_blas_lapack.C:260:3: error: cannot convert > 'double*' to 'PetscScalar* {aka std::complex<double>*}' for argument '3' > to 'void zgetrf_(PetscBLASInt*, PetscBLASInt*, PetscScalar*, > PetscBLASInt*, PetscBLASInt*, PetscBLASInt*)' > src/numerics/dense_matrix_blas_lapack.C: In instantiation of 'void > libMesh::DenseMatrix<T>::_lu_back_substitute_lapack(const > libMesh::DenseVector<T>&, libMesh::DenseVector<T>&) [with T = double]': > src/numerics/dense_matrix_blas_lapack.C:763:30: required from here > src/numerics/dense_matrix_blas_lapack.C:592:3: error: cannot convert > 'double*' to 'PetscScalar* {aka std::complex<double>*}' for argument '4' > to 'void zgetrs_(const char*, PetscBLASInt*, PetscBLASInt*, > PetscScalar*, PetscBLASInt*, PetscBLASInt*, PetscScalar*, PetscBLASInt*, > PetscBLASInt*)' > src/numerics/dense_matrix_blas_lapack.C: In instantiation of 'void > libMesh::DenseMatrix<T>::_matvec_blas(T, T, libMesh::DenseVector<T>&, > const libMesh::DenseVector<T>&, bool) const [with T = double]': > src/numerics/dense_matrix_blas_lapack.C:767:19: required from here > src/numerics/dense_matrix_blas_lapack.C:737:3: error: cannot convert > 'double*' to 'const PetscScalar* {aka const std::complex<double>*}' for > argument '4' to 'void zgemv_(const char*, const PetscBLASInt*, const > PetscBLASInt*, const PetscScalar*, const PetscScalar*, const > PetscBLASInt*, const PetscScalar*, const PetscBLASInt*, const > PetscScalar*, PetscScalar*, const PetscBLASInt*)' > src/numerics/dense_matrix_blas_lapack.C: In instantiation of 'void > libMesh::DenseMatrix<T>::_svd_helper(char, char, > std::__debug::vector<T>&, std::__debug::vector<T>&, > std::__debug::vector<T>&) [with T = double]': > src/numerics/dense_matrix_blas_lapack.C:772:66: required from here > src/numerics/dense_matrix_blas_lapack.C:499:3: error: cannot convert > 'double*' to 'PetscScalar* {aka std::complex<double>*}' for argument '5' > to 'void zgesvd_(const char*, const char*, PetscBLASInt*, PetscBLASInt*, > PetscScalar*, PetscBLASInt*, PetscReal*, PetscScalar*, PetscBLASInt*, > PetscScalar*, PetscBLASInt*, PetscScalar*, PetscBLASInt*, PetscReal*, > PetscBLASInt*)' > make[1]: *** [src/numerics/libmesh_dbg_la-dense_matrix_blas_lapack.lo] > Error 1 > make[1]: Leaving directory `/home/eftang/dev_software/libmesh' > make: *** [all-recursive] Error 1 > > > Thanks again, > Jens > > > On 08/16/2013 12:49 AM, David Knezevic wrote: > > I use " --with-clanguage=cxx" in the PETSc configuration. Can you try > > adding that? > > > > David > > > > > > On 08/16/2013 03:24 AM, Jens Lohne Eftang wrote: > >> I want to configure and compile libmesh for complex number support. > >> > >> However I get the following error when making libmesh: > >> > >> In file included from ./include/libmesh/tensor_tools.h:25:0, > >> from src/numerics/numeric_vector.C:33: > >> ./include/libmesh/compare_types.h:65:37: error: template argument 1 is > >> invalid > >> ./include/libmesh/compare_types.h:87:40: error: template argument 2 is > >> invalid > >> ./include/libmesh/compare_types.h:92:39: error: wrong number of template > >> arguments (1, should be 2) > >> ./include/libmesh/compare_types.h:77:8: error: provided for > >> 'template<class S, class T> struct libMesh::CompareTypes' > >> ./include/libmesh/compare_types.h:116:1: error: wrong number of template > >> arguments (1, should be 2) > >> ./include/libmesh/compare_types.h:77:8: error: provided for > >> 'template<class S, class T> struct libMesh::CompareTypes' > >> ./include/libmesh/compare_types.h:116:1: error: template argument 2 is > >> invalid > >> ./include/libmesh/compare_types.h:116:1: error: template argument 2 is > >> invalid > >> ./include/libmesh/compare_types.h:116:1: error: wrong number of template > >> arguments (1, should be 2) > >> ./include/libmesh/compare_types.h:77:8: error: provided for > >> 'template<class S, class T> struct libMesh::CompareTypes' > >> ./include/libmesh/compare_types.h:116:1: error: wrong number of template > >> arguments (1, should be 2) > >> > >> .... lots of similar errors ... > >> > >> src/numerics/numeric_vector.C: In instantiation of 'libMesh::Real > >> libMesh::NumericVector<T>::subset_l2_norm(const > >> std::__debug::set<unsigned int>&) const [with T = std::complex<double>; > >> libMesh::Real = double]': > >> src/numerics/numeric_vector.C:390:16: required from here > >> src/numerics/numeric_vector.C:348:5: error: no match for 'operator+=' in > >> 'norm += libMesh::TensorTools::norm_sq<std::complex<double> >((& > >> v)->libMesh::NumericVector<T>::operator()<std::complex<double> > >> >(((unsigned int)it.__gnu_debug::_Safe_iterator<_Iterator, > >> _Sequence>::operator*<std::_Rb_tree_const_iterator<unsigned int>, > >> std::__debug::set<unsigned int> >())))' > >> make[1]: *** [src/numerics/libmesh_dbg_la-numeric_vector.lo] Error 1 > >> > >> > >> I have configured petsc 3.4.2 with > >> > >> --download-f-blas-lapack=1 > >> --with-mpi-dir=/home/eftang/dev_software/mpich-install/ > >> --with-debugging=0 --with-shared-libraries=1 --download-mumps=1 > >> --download-umfpack=1 --with-scalar-type=complex --download-scalapack > >> --download-ptscotch > >> > >> and libmesh with > >> > >> ./configure --enable-complex --enable-shared --enable-slepc > >> --enable-everything > >> --with-eigen-include=/home/eftang/dev_software/eigen-3.1.2 > >> --prefix=/home/eftang/dev_software/libmesh_install > >> > >> > >> Any ideas? > >> > >> Best, > >> Jens > >> > >> > ------------------------------------------------------------------------------ > >> Get 100% visibility into Java/.NET code with AppDynamics Lite! > >> It's a free troubleshooting tool designed for production. > >> Get down to code-level detail for bottlenecks, with <2% overhead. > >> Download for free and get started troubleshooting in minutes. > >> > http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk > >> _______________________________________________ > >> Libmesh-users mailing list > >> [email protected] > >> https://lists.sourceforge.net/lists/listinfo/libmesh-users > > > ------------------------------------------------------------------------------ > > Get 100% visibility into Java/.NET code with AppDynamics Lite! > > It's a free troubleshooting tool designed for production. > > Get down to code-level detail for bottlenecks, with <2% overhead. > > Download for free and get started troubleshooting in minutes. > > > http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk > > _______________________________________________ > > Libmesh-users mailing list > > [email protected] > > https://lists.sourceforge.net/lists/listinfo/libmesh-users > > > > ------------------------------------------------------------------------------ > Get 100% visibility into Java/.NET code with AppDynamics Lite! > It's a free troubleshooting tool designed for production. > Get down to code-level detail for bottlenecks, with <2% overhead. > Download for free and get started troubleshooting in minutes. > http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk > _______________________________________________ > Libmesh-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/libmesh-users > ------------------------------------------------------------------------------ Get 100% visibility into Java/.NET code with AppDynamics Lite! It's a free troubleshooting tool designed for production. Get down to code-level detail for bottlenecks, with <2% overhead. Download for free and get started troubleshooting in minutes. http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk _______________________________________________ Libmesh-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/libmesh-users
