Any suggestions?
make check-TESTS
***************************************************************
* Running Example adaptivity_ex2:
* example-dbg -n_timesteps 25 -n_refinements 5 -output_freq 10 -init_timestep 0
***************************************************************
Usage:
/Users/huizhang/Software/libmesh/examples/adaptivity/adaptivity_ex2/.libs/example-dbg
-init_timestep 0
OR
/Users/huizhang/Software/libmesh/examples/adaptivity/adaptivity_ex2/.libs/example-dbg
-read_solution -init_timestep 26
Running:
/Users/huizhang/Software/libmesh/examples/adaptivity/adaptivity_ex2/.libs/example-dbg
-n_timesteps 25 -n_refinements 5 -output_freq 10 -init_timestep 0
Mesh Information:
mesh_dimension()=2
spatial_dimension()=3
n_nodes()=6273
n_local_nodes()=6273
n_elem()=13650
n_local_elem()=13650
n_active_elem()=10240
n_subdomains()=2
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
Failed to convert N7libMesh6SystemE pointer to
PN7libMesh15TransientSystemINS_20LinearImplicitSystemEEE
The N7libMesh6SystemE appears to be a
N7libMesh15TransientSystemINS_20LinearImplicitSystemEEE
Stack frames: 11
0: 0 libmesh_dbg.0.dylib 0x00000001001d9b9f
libMesh::print_trace(std::ostream&) + 36
1: 1 libmesh_dbg.0.dylib 0x00000001001d8a96
libMesh::MacroFunctions::report_error(char const*, int, char const*, char
const*) + 51
2: 2 example-dbg 0x0000000100020aaf
libMesh::TransientSystem<libMesh::LinearImplicitSystem>*
libMesh::libmesh_cast_ptr<libMesh::TransientSystem<libMesh::LinearImplicitSystem>*,
libMesh::System>(libMesh::System*) + 360
3: 3 example-dbg 0x0000000100020c19
libMesh::TransientSystem<libMesh::LinearImplicitSystem>&
libMesh::EquationSystems::get_system<libMesh::TransientSystem<libMesh::LinearImplicitSystem>
>(std::string const&) + 265
4: 4 example-dbg 0x000000010000a74c
init_cd(libMesh::EquationSystems&, std::string const&) + 272
5: 5 libmesh_dbg.0.dylib 0x0000000100a18f05
libMesh::System::user_initialization() + 59
6: 6 libmesh_dbg.0.dylib 0x0000000100a23fde
libMesh::System::init() + 100
7: 7 libmesh_dbg.0.dylib 0x00000001009df7d6
libMesh::EquationSystems::init() + 884
8: 8 example-dbg 0x000000010000afcf main + 1767
9: 9 example-dbg 0x0000000100008f98 start + 52
10: 10 ??? 0x0000000000000009 0x0 + 9
[0] ../../../include/libmesh/libmesh_common.h, line 431, compiled Nov 13 2013
at 19:40:19
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0
----------------------------------------------------------------------------------------------------------------
| Time: Wed Nov 13 19:40:52 2013
|
| OS: Darwin
|
| HostName: Hui-Zhangs-MacBook-Air.local
|
| OS Release: 10.8.0
|
| OS Version: Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011;
root:xnu-1504.15.3~1/RELEASE_I386 |
| Machine: i386
|
| Username: huizhang
|
| Configuration: ./configure '--prefix=/Users/huizhang/Software/libmesh/z-db'
|
| '--enable-mpi'
|
| '--enable-parmesh'
|
| '--enable-everything'
|
| '--enable-complex'
|
| '--enable-blocked-storage'
|
| '--with-vtk-include=/opt/local/include/vtk-5.10'
|
| '--with-vtk-lib=/opt/local/lib/vtk-5.10'
|
| '--with-hdf5=/opt/local/'
|
| 'PETSC_DIR=/Users/huizhang/Software/petsc'
|
| 'PETSC_ARCH=z-c++-db'
|
----------------------------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------------------------------------
| libMesh Performance: Alive time=2.27287, Active time=2.10384
|
-------------------------------------------------------------------------------------------------------------
| Event nCalls Total Time Avg Time Total Time
Avg Time % of Active Time |
| w/o Sub w/o Sub With Sub
With Sub w/o S With S |
|-------------------------------------------------------------------------------------------------------------|
|
|
|
|
| DofMap
|
| add_neighbors_to_send_list() 1 0.2215 0.221535 0.2215
0.221535 10.53 10.53 |
| build_sparsity() 1 0.1691 0.169118 0.4567
0.456714 8.04 21.71 |
| create_dof_constraints() 1 0.0352 0.035205 0.0352
0.035205 1.67 1.67 |
| distribute_dofs() 1 0.2350 0.234989 0.5266
0.526570 11.17 25.03 |
| dof_indices() 10240 0.2840 0.000028 0.2840
0.000028 13.50 13.50 |
| prepare_send_list() 1 0.0000 0.000011 0.0000
0.000011 0.00 0.00 |
| reinit() 1 0.2916 0.291577 0.2916
0.291577 13.86 13.86 |
|
|
| LocationMap
|
| find() 32736 0.1040 0.000003 0.1040
0.000003 4.94 4.94 |
| init() 5 0.0026 0.000514 0.0026
0.000514 0.12 0.12 |
|
|
| Mesh
|
| find_neighbors() 2 0.3433 0.171653 0.3433
0.171653 16.32 16.32 |
| renumber_nodes_and_elem() 4 0.0075 0.001872 0.0075
0.001872 0.36 0.36 |
|
|
| MeshRefinement
|
| _refine_elements() 5 0.2362 0.047232 0.5261
0.105218 11.23 25.01 |
| add_point() 32736 0.1685 0.000005 0.2813
0.000009 8.01 13.37 |
|
|
| Parallel
|
| allgather() 1 0.0000 0.000003 0.0000
0.000003 0.00 0.00 |
|
|
| Partitioner
|
| set_node_processor_ids() 1 0.0002 0.000195 0.0002
0.000195 0.01 0.01 |
| single_partition() 2 0.0046 0.002285 0.0046
0.002285 0.22 0.22 |
|
|
| XdrIO
|
| read() 1 0.0006 0.000595 0.0006
0.000595 0.03 0.03 |
-------------------------------------------------------------------------------------------------------------
| Totals: 75739 2.1038
100.00 |
-------------------------------------------------------------------------------------------------------------
FAIL: run.sh
====================================================
1 of 1 test failed
Please report to [email protected]
====================================================
make[4]: *** [check-TESTS] Error 1
make[3]: *** [check-am] Error 2
make[2]: *** [check] Error 2
make[1]: *** [check-recursive] Error 1
make: *** [check-recursive] Error 1
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