Hello,
I am struggling with the installation of libmesh on a mac running mavericks
with clang/clang++. I successfully installed PETSc 3.5.2 and SLEPc 3.5.1. I
also installed open-mpi and vtk 5.10.1 (these last two via homebrew, and mpi as
a pre-requisite to PETSc and SLEPc). My configure options for libmesh are as
follows:
configure --prefix=/usr/local
--with-vtk-include=/usr/local/opt/vtk5/include/vtk-5.10
--with-vtk-lib=/usr/local/opt/lib/vtk-5.10/ --with-cc=mpicc --with-cxx=mpic++
--enable-slepc --enable-petsc --enable-vtk --libdir=/usr/local
--includedir=/usr/local
When I type make I get the following compilation errors:
CXX src/numerics/libmesh_dbg_la-petsc_preconditioner.lo
src/numerics/petsc_preconditioner.C:86:14: error: no matching function for call
to 'PCSetOperators'
int ierr = PCSetOperators(_pc,_mat,_mat,SAME_NONZERO_PATTERN);
^~~~~~~~~~~~~~
src/numerics/petsc_preconditioner.C:301:16: note: in instantiation of member
function
'libMesh::PetscPreconditioner<double>::init' requested here
template class PetscPreconditioner<Number>;
^
/usr/local/include/petscpc.h:148:29: note: candidate function not viable:
requires 3 arguments, but 4 were provided
PETSC_EXTERN PetscErrorCode PCSetOperators(PC,Mat,Mat);
^
1 error generated.
make[1]: *** [src/numerics/libmesh_dbg_la-petsc_preconditioner.lo] Error 1
make: *** [all-recursive] Error 1
I am at a loss as to how to solve this, and any help would be much appreciated.
A secondary problem is that I cannot get the configure stage to recognise that
vtk is available; in spite of the fact that I instruct the configure command
that it should enable vtk, and that I give it its proper include and library
directory locations, for some reason, configure comes back with the following
output:
mpi.............................. : yes
nanoflann........................ : yes
nemesis.......................... : yes
version....................... : v5.22
netcdf........................... : yes
version....................... : 4
openmp........................... : no
parmetis......................... : yes
petsc............................ : yes
version....................... : 3.5.2
pthreads......................... : yes
sfcurves......................... : yes
slepc............................ : yes
tbb.............................. : no
c++ threads...................... : no
c++ rtti ........................ : yes
tecio............................ : no
tecplot...(vendor binaries)...... : no
tetgen........................... : yes
triangle......................... : yes
trilinos......................... : no
vtk.............................. : no
where you can see that vtk is finally not enabled. I saw in the mail list that
there was a problem with getting libmesh talking to version 6 of vtk, and that
is why I installed version 5. This is a secondary issue, but again, any help
would be much appreciated.
Thanks in advance,
Eduardo
Eduardo R. Hernández
Instituto de Ciencia de Materiales de Madrid (ICMM)
Consejo Superior de Investigaciones CientÃficas
Campus de Cantoblanco
28049 Madrid
tel.: +34 91 3348994
email: [email protected]
http://www.icmm.csic.es/ehernandez/Site/Home.html
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