Hi Cody, I have updated my OS X to the most recent packages, and retried the installation after restarting my system, but still failed. Also I am using GNU GCC compiler instead of Apple's clang, so I doubt if it can work with updating XCode. It doesn't have any problem with PETSc and SLEPc.
On Fri, Sep 25, 2015 at 1:34 PM, Cody Permann <codyperm...@gmail.com> wrote: > Xujun, > > I had a very similar issue just yesterday after grabbing the lastest (not > publically available yet) redistributable packages for our code MOOSE for > testing. This redistributable package contained compiler upgrades and > several new versions of our dependent libraries. After the installation, I > was getting odd assembly errors like you, almost the same. After not seeing > anything that could cause it for awhile I decided to finally install all my > system updates that have been backing up for the last several weeks. I > installed the lastest OS X patches, and XCode (not required for libMesh or > MOOSE) since I have it installed and restarted my system. After that, all > of those assembly errors just went away. > > I do know that Apple did some patching of the binutils recently but I > don't know much about it or why. I don't really like these unexplainable > fixes, but you might try the same procedure I just did and let us know if > it solves your issue or not. > > Cody > > On Fri, Sep 25, 2015 at 12:12 PM Xujun Zhao <xzha...@gmail.com> wrote: > >> This is on a Mac Pro laptop, and GCC 4.9 is used. >> >> The configure log is attached. Thanks >> >> Xujun >> >> >> >> On Fri, Sep 25, 2015 at 1:06 PM, Dmitry Karpeyev <karp...@mcs.anl.gov> >> wrote: >> >>> Xujun, >>> Can you send the output of configure and config.log. >>> Dmitry >>> >>> On Fri, Sep 25, 2015, 13:02 Cody Permann <codyperm...@gmail.com> wrote: >>> >>>> What operating system are you on? What compiler are you using? >>>> >>>> On Fri, Sep 25, 2015 at 11:58 AM Xujun Zhao <xzha...@gmail.com> wrote: >>>> >>>> > Hi all, >>>> > >>>> > I try to update my installation of libMesh. This is directly pulled >>>> from >>>> > github. >>>> > The configure log shows everything is good, but errors occur during >>>> make >>>> > Here it is: >>>> > >>>> > Making all in sfcurves >>>> > >>>> > make[2]: Nothing to be done for `all'. >>>> > >>>> > Making all in fparser >>>> > >>>> > /Applications/Xcode.app/Contents/Developer/usr/bin/make all-recursive >>>> > >>>> > Making all in extrasrc >>>> > >>>> > /Applications/Xcode.app/Contents/Developer/usr/bin/make all-am >>>> > >>>> > make[5]: Nothing to be done for `all-am'. >>>> > >>>> > CXX libdbg_la-fparser.lo >>>> > >>>> > */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:36049:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -2960(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:36403:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -2960(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:36461:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -2960(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:36811:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -2960(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:36869:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -2960(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:39346:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -2960(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:92956:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -272(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:92988:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -272(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:93020:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -272(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:93052:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -272(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:93084:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -272(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:93116:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -272(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:98179:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -1040(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:98481:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -1040(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:98617:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -1040(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:98939:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -1040(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:99008:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -1040(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:101122:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -1040(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:148403:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -994(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:148439:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -994(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:148475:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -994(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:148511:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -994(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:148547:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -994(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:148583:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -994(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:166176:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -26(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:167621:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -18(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:167669:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -26(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:189247:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -10(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:189269:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -10(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:189304:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -18(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:189340:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -18(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:189553:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -10(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:189575:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -10(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:189610:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -18(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:189646:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -18(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:201255:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -18(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:201538:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -18(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:201572:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -18(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:201619:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -26(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > >>>> */var/folders/ld/l3h41k4x0t33lycdjbx9sw300000gn/T//ccuccREq.s:201667:2: >>>> > **error: >>>> > **ambiguous instructions require an explicit suffix (could be >>>> 'filds', or >>>> > 'fildl')* >>>> > >>>> > fild -26(%rbp) >>>> > >>>> > * ^* >>>> > >>>> > make[4]: *** [libdbg_la-fparser.lo] Error 1 >>>> > >>>> > make[3]: *** [all-recursive] Error 1 >>>> > >>>> > make[2]: *** [all] Error 2 >>>> > >>>> > make[1]: *** [all-recursive] Error 1 >>>> > >>>> > make: *** [all-recursive] Error 1 >>>> > >>>> > >>>> ------------------------------------------------------------------------------ >>>> > _______________________________________________ >>>> > Libmesh-users mailing list >>>> > Libmesh-users@lists.sourceforge.net >>>> > https://lists.sourceforge.net/lists/listinfo/libmesh-users >>>> > >>>> >>>> ------------------------------------------------------------------------------ >>>> _______________________________________________ >>>> Libmesh-users mailing list >>>> Libmesh-users@lists.sourceforge.net >>>> https://lists.sourceforge.net/lists/listinfo/libmesh-users >>>> >>> >> ------------------------------------------------------------------------------ _______________________________________________ Libmesh-users mailing list Libmesh-users@lists.sourceforge.net 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