On Thu, Mar 3, 2016 at 9:46 AM, Harshad Sahasrabudhe <hsaha...@purdue.edu>
wrote:
> Hi John,
>
> I re-configured and re-checked that the two flags libmesh_LIBS and LIBS
> were not set in the environment. I have attached the config.log.
>
OK, so I think the extra flags are just coming from our call to
AC_HAVE_LIBRARY:
AC_HAVE_LIBRARY([vtkIO], [enablevtk=yes], [enablevtk=no],
[-lvtkCommon -lvtkFiltering -lvtkImaging])
We should probably update this since AC_HAVE_LIBRARY is obsolete [1], but
this isn't actually the problem.
The problem is that your version of VTK apparently can't link a main
program against only "-lvtkIO -lvtkCommon -lvtkFiltering -lvtkImaging",
since there are a ton of undefined references:
/apps/rhel6/vtk/5.10.1/VTK/lib/vtk-5.10/libvtkIO.so: undefined reference to
`vtkmetaio::MetaImage::HeaderSize() const'
/apps/rhel6/vtk/5.10.1/VTK/lib/vtk-5.10/libvtkIO.so: undefined reference to
`vtk_TIFFIsTiled'
/apps/rhel6/vtk/5.10.1/VTK/lib/vtk-5.10/libvtkIO.so: undefined reference to
`vtk_zlib_gzread'
/apps/rhel6/vtk/5.10.1/VTK/lib/vtk-5.10/libvtkIO.so: undefined reference to
`vtk_TIFFSetWarningHandler'
/apps/rhel6/vtk/5.10.1/VTK/lib/vtk-5.10/libvtkIO.so: undefined reference to
`vtksys::Glob::FindFiles(std::string const&)'
/apps/rhel6/vtk/5.10.1/VTK/lib/vtk-5.10/libvtkIO.so: undefined reference to
`vtksys::SystemTools::GetFilenameName(std::string const&)'
/apps/rhel6/vtk/5.10.1/VTK/lib/vtk-5.10/libvtkIO.so: undefined reference to
`LSDynaFamily::BufferChunk(LSDynaFamily::WordType, long long)'
/apps/rhel6/vtk/5.10.1/VTK/lib/vtk-5.10/libvtkIO.so: undefined reference to
`vtkmetaio::MetaImage::Modality() const'
/apps/rhel6/vtk/5.10.1/VTK/lib/vtk-5.10/libvtkIO.so: undefined reference to
`vtk_png_set_error_fn'
...
plus many more.
I actually don't know if we've ever tested our configure scripts with VTK
5.10.1, I see a note there about 5.4, but nothing later. Is there any way
you could try a newer version, like 6.3? I'm pretty sure that works.
[1]:
https://www.gnu.org/software/autoconf/manual/autoconf-2.69/html_node/Obsolete-Macros.html
--
John
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