Thank you, that was really useful. I didn’t know I could use pkg-config to obtain the libmesh dependencies. I had to replace find_package(Pkgconfig QUIET) (could not find it) for include(FindPkgConfig) and also add the petsc library to the rpath with:
set(CMAKE_BUILD_WITH_INSTALL_RPATH TRUE) set(CMAKE_INSTALL_RPATH “path/to/petsc/lib”) Miguel From: Antonio Cervone <[email protected]<mailto:[email protected]>> Date: Thursday, April 7, 2016 at 3:09 AM To: Miguel Salazar <[email protected]<mailto:[email protected]>>, Roy Stogner <[email protected]<mailto:[email protected]>> Cc: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re: [Libmesh-users] Linking application to libMesh I have developed this in the past https://github.com/capitalaslash/fsi/blob/master/cmake/FindLIBMESH.cmake it used to work for both opt and debug builds. let me know if it is of help antonio On Wed, Apr 6, 2016 at 7:59 PM Salazar De Troya, Miguel <[email protected]<mailto:[email protected]>> wrote: The compiler flags are provided by ${LIBMES_DIR}/bin/libmesh-config ‹cxxflags and ‹cflags right? In that case, I do pass them. This is the object compilation output for the cmake and the Makefile /usr/local/tools/openmpi-intel-1.8.4/bin/mpicxx -std=gnu++11 -std=gnu++11 -fopenmp -g -w1 -g -wd175 -wd1476 -wd1505 -wd1572 -DDEBUG -I/g/g92/miguel/code/libmesh_2D/include -I/usr/include/curl -I/usr/include/glpk -I/usr/local/tools/vtk-6.1.0/include/vtk-6.1 -I/g/g92/miguel/petsc-3.6.2/include -I/g/g92/miguel/petsc-3.6.2/miguel-opt/include -I/usr/local/tools/openmpi-intel-1.8.4/include/openmpi/opal/mca/hwloc/hwloc 191/hwloc/include -I/usr/local/tools/openmpi-intel-1.8.4/include/openmpi/opal/mca/event/libev ent2021/libevent -I/usr/local/tools/openmpi-intel-1.8.4/include/openmpi/opal/mca/event/libev ent2021/libevent/include -I/usr/local/tools/openmpi-intel-1.8.4/include -I/usr/local/tools/openmpi-intel-1.8.4/include/openmpi -I/usr/local/tools/boost-mpi-1.55.0/include -I/g/g92/miguel/code/AMR-vector/include -o CMakeFiles/vector_cmake.dir/src/stress_recovery_error_estimator.C.o -c /g/g92/miguel/code/AMR-vector/src/stress_recovery_error_estimator.C /usr/local/tools/openmpi-intel-1.8.4/bin/mpicxx -DDEBUG -std=gnu++11 -w1 -g -wd175 -wd1476 -wd1505 -wd1572 -fopenmp -I/g/g92/miguel/code/libmesh_2D/include -I/usr/include/curl -I/usr/include/glpk -I/usr/local/tools/vtk-6.1.0/include/vtk-6.1 -I/g/g92/miguel/petsc-3.6.2/include -I/g/g92/miguel/petsc-3.6.2/miguel-opt/include -I/usr/local/tools/openmpi-intel-1.8.4/include/openmpi/opal/mca/hwloc/hwloc 191/hwloc/include -I/usr/local/tools/openmpi-intel-1.8.4/include/openmpi/opal/mca/event/libev ent2021/libevent -I/usr/local/tools/openmpi-intel-1.8.4/include/openmpi/opal/mca/event/libev ent2021/libevent/include -I/usr/local/tools/openmpi-intel-1.8.4/include -I/usr/local/tools/openmpi-intel-1.8.4/include/openmpi -I/usr/local/tools/boost-mpi-1.55.0//include -c stress_recovery_error_estimator.C -o stress_recovery_error_estimator.x86_64-unknown-linux-gnu.dbg.o Where can I find information about the compiler flags: -wd175 -wd1476 -wd1505 -wd1572 ? Miguel On 4/6/16, 10:38 AM, "Roy Stogner" <[email protected]<mailto:[email protected]>> wrote: > >On Wed, 6 Apr 2016, Salazar De Troya, Miguel wrote: > >> I understand that this error is difficult to diagnose through email, >>but I >> would really appreciate help on how to debug it. The same application >>runs >> perfectly when I compile it with the usual Makefile. > >Are you compiling with the libMesh compiler flags included? If your >objects don't all use the same preprocessor macros for e.g. >_GLIBCXX_DEBUG then you can get ABI incompatibilities. >--- >Roy ------------------------------------------------------------------------------ _______________________________________________ Libmesh-users mailing list [email protected]<mailto:[email protected]> https://lists.sourceforge.net/lists/listinfo/libmesh-users ------------------------------------------------------------------------------ _______________________________________________ Libmesh-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/libmesh-users
