On Wed, Apr 5, 2017 at 8:23 AM, Jed Brown <[email protected]> wrote: > John Peterson <[email protected]> writes: > > > On Wed, Apr 5, 2017 at 2:39 AM, Vasileios Vavourakis <[email protected]> > > wrote: > > > >> dear all, > >> > >> after pulling the newest version of libmesh (commit > >> dbcd57f5f718a088a19b9be38f162b997ec8f97c) and configuring the library: > >> > >> START ========================== > >> ./configure --enable-everything --with-methods="opt" \ > >> --enable-petsc PETSC_DIR=/Users/vasvav/Programs/petsc > >> PETSC_ARCH=arch-darwin-c-opt --with-metis=PETSc \ > >> --with-glpk-include=/usr/local/Cellar/glpk/4.61/include > >> --with-glpk-lib=/usr/local/Cellar/glpk/4.61/lib \ > >> --enable-netcdf --enable-netcdf-4 --enable-exodus \ > >> --disable-shared --disable-complex --disable-1D-only --disable-2D-only > >> --disable-openmp --disable-eigen --disable-ifem --disable-pfem > >> --disable-slepc --disable-trilinos --disable-tecio --disable-tecplot > >> --disable-tetgen --disable-triangle --disable-qhull --disable-tbb > >> --disable-pthreads --disable-cppthreads --disable-openmp \ > >> --prefix=/Users/vasvav/Programs/installed/libmesh-1.2.0-opt > >> END ============================= > >> > >> I receive the following error: > >> > >> START ========================== > >> ... > >> CXX src/numerics/libmesh_opt_la-numeric_vector.lo > >> CXX src/numerics/libmesh_opt_la-petsc_matrix.lo > >> /numerics/petsc_matrix.C:811:10: error: use of undeclared identifier > >> 'MatGetSubMatrix' > >> ierr = MatGetSubMatrix(_mat, > >> ^ > >> src/numerics/petsc_matrix.C:1131:16: note: in instantiation of member > >> function 'libMesh::PetscMatrix<double>::_get_submatrix' requested here > >> template class PetscMatrix<Number>; > >> ^ > >> 1 error generated. > >> make[1]: *** [src/numerics/libmesh_opt_la-petsc_matrix.lo] Error 1 > >> make: *** [all-recursive] Error 1 > >> END ============================= > >> > >> can someone please give it a look? many thanks (: > >> > > > > Pretty strange error, I do not believe this code has changed in quite > some > > time. > > > > What version of PETSc are you using? Perhaps they removed or renamed this > > function in some newer version... I will have a look at the PETSc git > repo. > > This is the relevant change. > > https://bitbucket.org/petsc/petsc/commits/e5afe51eb893b84db4c1ba433bd470 > 71c0e5af81
Thanks for the info Jed. Vasileios, the quickest fix for you is probably to change that line from MatGetSubMatrix -> MatCreateSubMatrix. The argument list is unchanged I believe. Please let us know if you run into any other issues with using petsc-dev. -- John ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ Libmesh-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/libmesh-users
