Dear Libmesh team,
I have built libmesh with vtk support.
The build runs okay, but the library can see path to some of the
necessary vtk libraries only, and some libraries are not found.
Is it possible to fix this somehow? Thank you!
Michael.
p.s.
Here is the ldd output and the config.log is attached.
ldd /home/mpovolot/photonics/libmesh/libmesh-1.2.0/built/lib/libmesh_opt.so
linux-vdso.so.1 => (0x00007ffccefa6000)
libnetcdf.so.7 =>
/home/mpovolot/photonics/libmesh/libmesh-1.2.0/built/lib/libnetcdf.so.7
(0x00002b750af11000)
libcurl.so.4 => /usr/lib64/libcurl.so.4 (0x00002b750b25b000)
libglpk.so.0 => /usr/lib64/libglpk.so.0 (0x00002b750b4b0000)
libvtkIOCore-6.3.so.1 =>
/depot/itap/tsaiwei/apps/vtk/6.3.0_test/lib/libvtkIOCore-6.3.so.1
(0x00002b750b77b000)
libvtkCommonCore-6.3.so.1 =>
/depot/itap/tsaiwei/apps/vtk/6.3.0_test/lib/libvtkCommonCore-6.3.so.1
(0x00002b750b9e6000)
libvtkCommonDataModel-6.3.so.1 =>
/depot/itap/tsaiwei/apps/vtk/6.3.0_test/lib/libvtkCommonDataModel-6.3.so.1
(0x00002b750c007000)
libvtkFiltersCore-6.3.so.1 =>
/depot/itap/tsaiwei/apps/vtk/6.3.0_test/lib/libvtkFiltersCore-6.3.so.1
(0x00002b750c513000)
libvtkIOXML-6.3.so.1 =>
/depot/itap/tsaiwei/apps/vtk/6.3.0_test/lib/libvtkIOXML-6.3.so.1
(0x00002b750cb81000)
libvtkImagingCore-6.3.so.1 =>
/depot/itap/tsaiwei/apps/vtk/6.3.0_test/lib/libvtkImagingCore-6.3.so.1
(0x00002b750ce4a000)
libvtkIOImage-6.3.so.1 =>
/depot/itap/tsaiwei/apps/vtk/6.3.0_test/lib/libvtkIOImage-6.3.so.1
(0x00002b750d2aa000)
libvtkImagingMath-6.3.so.1 =>
/depot/itap/tsaiwei/apps/vtk/6.3.0_test/lib/libvtkImagingMath-6.3.so.1
(0x00002b750d600000)
libvtkIOParallelXML-6.3.so.1 =>
/depot/itap/tsaiwei/apps/vtk/6.3.0_test/lib/libvtkIOParallelXML-6.3.so.1
(0x00002b750d83d000)
libvtkParallelMPI-6.3.so.1 =>
/depot/itap/tsaiwei/apps/vtk/6.3.0_test/lib/libvtkParallelMPI-6.3.so.1
(0x00002b750da63000)
libvtkParallelCore-6.3.so.1 =>
/depot/itap/tsaiwei/apps/vtk/6.3.0_test/lib/libvtkParallelCore-6.3.so.1
(0x00002b750dc84000)
libz.so.1 => /lib64/libz.so.1 (0x00002b750ded7000)
libmkl_scalapack_lp64.so =>
/apps/rhel6/intel/compilers_and_libraries_2016.1.150/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so
(0x00002b750e0ee000)
libmkl_blacs_intelmpi_lp64.so =>
/apps/rhel6/intel/compilers_and_libraries_2016.1.150/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so
(0x00002b750e9da000)
libmkl_intel_lp64.so =>
/apps/rhel6/intel/compilers_and_libraries_2016.1.150/linux/mkl/lib/intel64/libmkl_intel_lp64.so
(0x00002b750ec16000)
libmkl_gnu_thread.so =>
/apps/rhel6/intel/compilers_and_libraries_2016.1.150/linux/mkl/lib/intel64/libmkl_gnu_thread.so
(0x00002b750f555000)
libmkl_core.so =>
/apps/rhel6/intel/compilers_and_libraries_2016.1.150/linux/mkl/lib/intel64/libmkl_core.so
(0x00002b7510488000)
libX11.so.6 => /usr/lib64/libX11.so.6 (0x00002b7511dbf000)
libhwloc.so.5 => /usr/lib64/libhwloc.so.5 (0x00002b75120fd000)
libssl.so.10 => /usr/lib64/libssl.so.10 (0x00002b7512325000)
libcrypto.so.10 => /usr/lib64/libcrypto.so.10 (0x00002b7512591000)
libmpi_usempif08.so.11 =>
/apps/conte/openmpi/1.10.1/gcc-5.2.0/lib/libmpi_usempif08.so.11
(0x00002b7512976000)
libmpi_usempi_ignore_tkr.so.6 =>
/apps/conte/openmpi/1.10.1/gcc-5.2.0/lib/libmpi_usempi_ignore_tkr.so.6
(0x00002b7512ba5000)
libmpi_mpifh.so.12 =>
/apps/conte/openmpi/1.10.1/gcc-5.2.0/lib/libmpi_mpifh.so.12
(0x00002b7512dab000)
libgfortran.so.3 => /apps/rhel6/gcc/5.2.0/lib64/libgfortran.so.3
(0x00002b7513003000)
libquadmath.so.0 => /apps/rhel6/gcc/5.2.0/lib64/libquadmath.so.0
(0x00002b7513323000)
libgomp.so.1 => /apps/rhel6/gcc/5.2.0/lib64/libgomp.so.1
(0x00002b7513561000)
libmpi_cxx.so.1 =>
/apps/conte/openmpi/1.10.1/gcc-5.2.0/lib/libmpi_cxx.so.1
(0x00002b7513783000)
libmpi.so.12 =>
/apps/conte/openmpi/1.10.1/gcc-5.2.0/lib/libmpi.so.12 (0x00002b751399d000)
libosmcomp.so.3 => /usr/lib64/libosmcomp.so.3 (0x00002b7513c7b000)
libibverbs.so.1 => /usr/lib64/libibverbs.so.1 (0x00002b7513e89000)
libopen-rte.so.12 =>
/apps/conte/openmpi/1.10.1/gcc-5.2.0/lib/libopen-rte.so.12
(0x00002b7514097000)
libopen-pal.so.13 =>
/apps/conte/openmpi/1.10.1/gcc-5.2.0/lib/libopen-pal.so.13
(0x00002b7514312000)
libnuma.so.1 => /usr/lib64/libnuma.so.1 (0x00002b75145ef000)
libpciaccess.so.0 => /usr/lib64/libpciaccess.so.0 (0x00002b75147fa000)
libdl.so.2 => /lib64/libdl.so.2 (0x00002b7514a03000)
librt.so.1 => /lib64/librt.so.1 (0x00002b7514c08000)
libutil.so.1 => /lib64/libutil.so.1 (0x00002b7514e10000)
libstdc++.so.6 => /apps/rhel6/gcc/5.2.0/lib64/libstdc++.so.6
(0x00002b7515013000)
libm.so.6 => /lib64/libm.so.6 (0x00002b75153a1000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x00002b7515625000)
libc.so.6 => /lib64/libc.so.6 (0x00002b7515842000)
libgcc_s.so.1 => /apps/rhel6/gcc/5.2.0/lib64/libgcc_s.so.1
(0x00002b7515bd7000)
libidn.so.11 => /lib64/libidn.so.11 (0x00002b7515ded000)
libldap-2.4.so.2 => /lib64/libldap-2.4.so.2 (0x00002b751601f000)
libgssapi_krb5.so.2 => /lib64/libgssapi_krb5.so.2 (0x00002b7516270000)
libkrb5.so.3 => /lib64/libkrb5.so.3 (0x00002b75164b4000)
libk5crypto.so.3 => /lib64/libk5crypto.so.3 (0x00002b751679b000)
libcom_err.so.2 => /lib64/libcom_err.so.2 (0x00002b75169c8000)
libssl3.so => /usr/lib64/libssl3.so (0x00002b7516bcc000)
libsmime3.so => /usr/lib64/libsmime3.so (0x00002b7516e0f000)
libnss3.so => /usr/lib64/libnss3.so (0x00002b751703c000)
libnssutil3.so => /usr/lib64/libnssutil3.so (0x00002b751737c000)
libplds4.so => /lib64/libplds4.so (0x00002b75175a8000)
libplc4.so => /lib64/libplc4.so (0x00002b75177ad000)
libnspr4.so => /lib64/libnspr4.so (0x00002b75179b2000)
libssh2.so.1 => /usr/lib64/libssh2.so.1 (0x00002b7517bf0000)
/lib64/ld-linux-x86-64.so.2 (0x000000321f400000)
libvtkCommonExecutionModel-6.3.so.1 => not found
libvtkCommonMisc-6.3.so.1 => not found
libvtkzlib-6.3.so.1 => not found
libvtksys-6.3.so.1 => not found
libvtkCommonSystem-6.3.so.1 => not found
libvtkCommonTransforms-6.3.so.1 => not found
libvtkCommonMath-6.3.so.1 => not found
libvtksys-6.3.so.1 => not found
libvtkCommonMath-6.3.so.1 => not found
libvtkCommonMisc-6.3.so.1 => not found
libvtkCommonSystem-6.3.so.1 => not found
libvtkCommonTransforms-6.3.so.1 => not found
libvtksys-6.3.so.1 => not found
libvtkCommonExecutionModel-6.3.so.1 => not found
libvtkCommonMath-6.3.so.1 => not found
libvtkCommonMisc-6.3.so.1 => not found
libvtkCommonSystem-6.3.so.1 => not found
libvtkCommonTransforms-6.3.so.1 => not found
libvtkIOGeometry-6.3.so.1 => not found
libvtkIOXMLParser-6.3.so.1 => not found
libvtksys-6.3.so.1 => not found
libvtkCommonExecutionModel-6.3.so.1 => not found
libvtkCommonMisc-6.3.so.1 => not found
libvtkCommonSystem-6.3.so.1 => not found
libvtkCommonTransforms-6.3.so.1 => not found
libvtkCommonMath-6.3.so.1 => not found
libvtkCommonExecutionModel-6.3.so.1 => not found
libvtkCommonMath-6.3.so.1 => not found
libvtkCommonSystem-6.3.so.1 => not found
libvtkCommonTransforms-6.3.so.1 => not found
libvtkCommonMisc-6.3.so.1 => not found
libvtkCommonExecutionModel-6.3.so.1 => not found
libvtkCommonMath-6.3.so.1 => not found
libvtkCommonMisc-6.3.so.1 => not found
libvtkCommonSystem-6.3.so.1 => not found
libvtkCommonTransforms-6.3.so.1 => not found
libvtkjpeg-6.3.so.1 => not found
libvtkpng-6.3.so.1 => not found
libvtktiff-6.3.so.1 => not found
libvtkmetaio-6.3.so.1 => not found
libvtkDICOMParser-6.3.so.1 => not found
libvtkzlib-6.3.so.1 => not found
libvtksys-6.3.so.1 => not found
libvtkCommonExecutionModel-6.3.so.1 => not found
libvtkCommonMisc-6.3.so.1 => not found
libvtkCommonSystem-6.3.so.1 => not found
libvtkCommonTransforms-6.3.so.1 => not found
libvtkCommonMath-6.3.so.1 => not found
libvtksys-6.3.so.1 => not found
libvtkIOGeometry-6.3.so.1 => not found
libvtkIOXMLParser-6.3.so.1 => not found
libvtkIOLegacy-6.3.so.1 => not found
libvtkCommonExecutionModel-6.3.so.1 => not found
libvtkCommonMisc-6.3.so.1 => not found
libvtkCommonSystem-6.3.so.1 => not found
libvtkCommonTransforms-6.3.so.1 => not found
libvtkCommonMath-6.3.so.1 => not found
libvtkIOLegacy-6.3.so.1 => not found
libvtkCommonExecutionModel-6.3.so.1 => not found
libvtkCommonMisc-6.3.so.1 => not found
libvtkCommonSystem-6.3.so.1 => not found
libvtkCommonTransforms-6.3.so.1 => not found
libvtkCommonMath-6.3.so.1 => not found
libvtkIOLegacy-6.3.so.1 => not found
libvtksys-6.3.so.1 => not found
libvtkCommonExecutionModel-6.3.so.1 => not found
libvtkCommonMisc-6.3.so.1 => not found
libvtkCommonSystem-6.3.so.1 => not found
libvtkCommonTransforms-6.3.so.1 => not found
libvtkCommonMath-6.3.so.1 => not found
libxcb.so.1 => /usr/lib64/libxcb.so.1 (0x00002b7517e31000)
libpci.so.3 => /lib64/libpci.so.3 (0x00002b7518050000)
libxml2.so.2 => /usr/lib64/libxml2.so.2 (0x00002b751825c000)
libibumad.so.3 => /usr/lib64/libibumad.so.3 (0x00002b75185b0000)
liblber-2.4.so.2 => /lib64/liblber-2.4.so.2 (0x00002b75187b8000)
libresolv.so.2 => /lib64/libresolv.so.2 (0x00002b75189c8000)
libsasl2.so.2 => /usr/lib64/libsasl2.so.2 (0x00002b7518be2000)
libkrb5support.so.0 => /lib64/libkrb5support.so.0 (0x00002b7518dfc000)
libkeyutils.so.1 => /lib64/libkeyutils.so.1 (0x00002b7519008000)
libXau.so.6 => /usr/lib64/libXau.so.6 (0x00002b751920b000)
libcrypt.so.1 => /lib64/libcrypt.so.1 (0x00002b751940f000)
libselinux.so.1 => /lib64/libselinux.so.1 (0x00002b7519646000)
libfreebl3.so => /lib64/libfreebl3.so (0x00002b7519866000)
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