Hello again,
Sorry to be somewhat needy, but I am using Ubuntu, and configuring with
Petsc. I specified PETSC_DIR and PETSC_ARCH, but after configuring, petsc,
triangle, tetgen are not found?
For completeness, here are the contents of my do_configure file. I (chmod
+x)'ed this and run, from ~/src:
sudo git clone (libmesh git location)
cd libmesh
sudo ./do_configure
And the resulting summary is:
----------------------------------- SUMMARY
-----------------------------------
Package version.................... : libmesh-1.3.0-pre
C++ compiler type.................. : gcc5
C++ compiler....................... : mpicxx
C compiler......................... : mpicc
Fortran compiler................... : mpif90
Build Methods...................... : dbg devel opt
CPPFLAGS...(dbg)................... : -DDEBUG -D_GLIBCXX_DEBUG
-D_GLIBCXX_DEBUG_PEDANTIC
CXXFLAGS...(dbg)................... : -std=gnu++11 -O0 -felide-constructors
-g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith
-Wformat -Wparentheses -Woverloaded-virtual -Wno-variadic-macros -fopenmp
-std=gnu++11
CFLAGS.....(dbg)................... : -g -Wimplicit -fopenmp
CPPFLAGS...(devel)................. :
CXXFLAGS...(devel)................. : -std=gnu++11 -O2 -felide-constructors
-g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith
-Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing
-Woverloaded-virtual -Wdisabled-optimization -Wno-variadic-macros -fopenmp
-std=gnu++11
CFLAGS.....(devel)................. : -O2 -g -Wimplicit -funroll-loops
-fstrict-aliasing -fopenmp
CPPFLAGS...(opt)................... : -DNDEBUG
CXXFLAGS...(opt)................... : -std=gnu++11 -O2 -felide-constructors
-funroll-loops -fstrict-aliasing -Wdisabled-optimization
-Wno-variadic-macros -fopenmp -std=gnu++11
CFLAGS.....(opt)................... : -O2 -funroll-loops -fstrict-aliasing
-fopenmp
Install dir........................ : /opt/libmesh-master
Build user......................... : root
Build host......................... : Harmony
Build architecture................. : x86_64-unknown-linux-gnu
Git revision....................... :
cf5616c3908f9f221b25b469b30aad9d279511a7
Library Features:
library warnings................. : yes
library deprecated code support.. : yes
adaptive mesh refinement......... : yes
blocked matrix/vector storage.... : no
complex variables................ : yes
example suite.................... : yes
ghosted vectors.................. : yes
high-order shape functions....... : yes
unique-id support................ : yes
id size (boundaries)............. : 2 bytes
id size (dofs)................... : 4 bytes
id size (unique)................. : 8 bytes
id size (processors)............. : 2 bytes
id size (subdomains)............. : 2 bytes
infinite elements................ : yes
Dirichlet constraints............ : yes
node constraints................. : yes
parallel mesh.................... : yes
performance logging.............. : yes
periodic boundary conditions..... : yes
reference counting............... : yes
shape function 2nd derivatives... : yes
stack trace files................ : yes
track node valence............... : yes
variational smoother............. : yes
xdr binary I/O................... : yes
Optional Packages:
boost............................ : yes
capnproto........................ : no
cppunit.......................... : no
curl............................. : no
eigen............................ : yes
exodus........................... : yes
version....................... : v5.22
fparser.......................... : yes
build from version............ : release
glpk............................. : no
gmv.............................. : yes
gzstream......................... : yes
hdf5............................. : no
laspack.......................... : no
libhilbert....................... : yes
metis............................ : yes
mpi.............................. : yes
nanoflann........................ : yes
nemesis.......................... : yes
version....................... : v5.22
netcdf........................... : yes
version....................... : 4
nlopt............................ : no
parmetis......................... : yes
petsc............................ : no
qhull............................ : yes
sfcurves......................... : no
slepc............................ : no
thread model..................... : pthread
c++ rtti ........................ : yes
tecio............................ : yes
tecplot...(vendor binaries)...... : no
tetgen........................... : no
triangle......................... : no
trilinos......................... : yes
AztecOO....................... :
NOX........................... :
ML............................ :
Tpetra........................ :
DTK........................... :
Ifpack........................ :
Epetra........................ :
EpetraExt..................... :
vtk.............................. : yes
version....................... : 6.2.0
libmesh_optional_INCLUDES........ : -I/usr/include/eigen3
-I/usr/include/vtk-6.2 -I/usr/include/mpi -I/usr/include
libmesh_optional_LIBS............ : -lvtkIOCore-6.2 -lvtkCommonCore-6.2
-lvtkCommonDataModel-6.2 -lvtkFiltersCore-6.2 -lvtkIOXML-6.2
-lvtkImagingCore-6.2 -lvtkIOImage-6.2 -lvtkImagingMath-6.2
-lvtkIOParallelXML-6.2 -lvtkParallelMPI-6.2 -lvtkParallelCore-6.2 -lz -lmpi
-L/usr/lib/vtk-6.2 -L/usr/lib
-------------------------------------------------------------------------------
Configure complete, now type 'make' and then 'make install'.
I actually don't recall installing trilinos, but installed triangle and
tetgen with synaptic package manager. I specified the tetgen include and
header, so expected these to be found, but they were not?
I spoke with others who specified PETSC_DIR and PETSC_ARCH, and so used
their process, but mine is not found?
This is somewhat of a basic question, so if anyone could help I'd really
appreciate it!
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