This issue is fixed in 1.2.1 which has an upgraded netcdf.
> On Dec 19, 2017, at 4:07 PM, Michael Povolotskyi <mpovo...@purdue.edu> wrote: > > Dear Libmesh support team, > > I'm installing libmesh on a new PC with Fedora, and I have got the following > error: > > make[5]: Leaving directory > '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0/contrib/netcdf/v4/liblib' > make[4]: Leaving directory > '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0/contrib/netcdf/v4/liblib' > Making install in ncgen3 > make[4]: Entering directory > '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0/contrib/netcdf/v4/ncgen3' > CCLD ncgen3 > ../liblib/.libs/libnetcdf.so: undefined reference to `H5Pset_fapl_mpiposix' > collect2: error: ld returned 1 exit status > make[4]: *** [Makefile:491: ncgen3] Error 1 > make[4]: Leaving directory > '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0/contrib/netcdf/v4/ncgen3' > make[3]: *** [Makefile:610: install-recursive] Error 1 > make[3]: Leaving directory > '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0/contrib/netcdf/v4' > make[2]: *** [Makefile:978: install-recursive] Error 1 > make[2]: Leaving directory > '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0/contrib' > make[1]: *** [Makefile:29051: install-recursive] Error 1 > make[1]: Leaving directory > '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0' > make: *** [Makefile.openmpi:28: build] Error 2 > 87.934u 15.745s 0:55.97 185.2% 0+0k 51736+664688io 65pf+0w > > I googled it, looks like it is a known issue, but I do not know how to > proceed. Can I simply avoid netcdf build? > > I attach my configuration log. > > Thank you, > > Michael. > > > ------------------------------------------------------------------------------ > Check out the vibrant tech community on one of the world's most > engaging tech sites, Slashdot.org! http://sdm.link/slashdot > _______________________________________________ > Libmesh-users mailing list > Libmesh-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/libmesh-users ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ Libmesh-users mailing list Libmesh-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/libmesh-users
