Dear all,
I am trying to install libmesh (as a part of the MOOSE framework) on a
cluster (no root). The problem is that I am continuously having this
error message:
"/ld: gk_cur_jbufs: TLS definition
in*/usr/local/lib/libmetis.a(error.c.o)* section .tdata mismatches
non-TLS definition in /cluster/petsc/petsc-3.9.3/lib///libmetis.so
<http://libmetis.so>//section .data//
//*/cluster/petsc/petsc-3.9.3/lib/*/*/libmetis.so
<http://libmetis.so>/*/: error adding symbols: Bad value//
//make[1]: *** [meshid-opt] Error 1//
//make[1]: *** Waiting for unfinished jobs..../"
The problem is that there is a conflict of libraries (metis shared and
static). The PETSc version installed (against which I would like to
link) does provide a so library (under cluster/petsc/petsc-3.9.3/lib).
However, libmesh always tries always to further link to an existing old
static libraries in the common path (under /usr/local/lib/).
I already asked on the MOOSE user group, and received this answer:
/"//The issue seems to be that there are two libmetis libraries under
consideration by the linker, and because their thread-local storage
("TLS") declarations disagree, the linker throws an error. The only way
we have been able to fix this in the past is to remove the system
libmetis (the one in /usr/local/lib) completely, but this is obviously
not acceptable in all situations, so it would be nice to come up with a
better solution. It would be nice, for example if the "first"
//libmetis.so <http://libmetis.so>//could somehow take precedence and
the second one could be ignored...//"/
The IT administrator asks whether it is possible to exclude the static
library from the making (I think it would not be possible to delete it).
However, it is not clear to me if that is possible at all, and where.
Any suggestion/help/way out would be really appreciated.
Thanks,
Mauro
--
Dr. Mauro Cacace
Department 6 Geotechnologies
Section 6.1 Basin Modelling
Phone : +49(0)331/288-1783
Fax : +49(0)331/288-1349
Email : cac...@gfz-potsdam.de
_________________________________________
Helmholtz Centre Potsdam
*GFZ German Research Centre for Geosciences*
Foundation under public law of the federal state
of Brandenburg
Telegrafenberg, D-14473 Potsdam
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