Hi, I recently configured petsc after pulling from the master branch,
configuring using the
arch-linux-pkgs-64idx.py
script provided, and specified this when trying to install libmesh-1.4.0,
which failed with error message:
...
CXX src/numerics/libmesh_dbg_la-sparse_matrix.lo
CXX src/numerics/libmesh_dbg_la-sparse_shell_matrix.lo
CXX src/numerics/libmesh_dbg_la-sum_shell_matrix.lo
CXX src/numerics/libmesh_dbg_la-tensor_shell_matrix.lo
In file included from ./include/libmesh/petsc_vector.h:31,
from ../src/numerics/petsc_vector.C:24:
../src/numerics/petsc_vector.C: In member function ‘virtual void
libMesh::PetscVector<T>::localize(libMesh::NumericVector<T>&) const’:
./include/libmesh/petsc_macro.h:94:58: error: there are no arguments to
‘VecScatterCreateWithData’ that depend on a template parameter, so a
declaration of ‘VecScatterCreateWithData’ must be available [-fpermissive]
# define LibMeshVecScatterCreate(xin,ix,yin,iy,newctx)
VecScatterCreateWithData(xin,ix,yin,iy,newctx)
^~~~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C:685:10: note: in expansion of macro
‘LibMeshVecScatterCreate’
ierr = LibMeshVecScatterCreate(_vec, is,
^~~~~~~~~~~~~~~~~~~~~~~
./include/libmesh/petsc_macro.h:94:58: note: (if you use ‘-fpermissive’,
G++ will accept your code, but allowing the use of an undeclared name is
deprecated)
# define LibMeshVecScatterCreate(xin,ix,yin,iy,newctx)
VecScatterCreateWithData(xin,ix,yin,iy,newctx)
^~~~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C:685:10: note: in expansion of macro
‘LibMeshVecScatterCreate’
ierr = LibMeshVecScatterCreate(_vec, is,
^~~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C: In member function ‘virtual void
libMesh::PetscVector<T>::localize(libMesh::NumericVector<T>&, const
std::__debug::vector<long unsigned int>&) const’:
./include/libmesh/petsc_macro.h:94:58: error: there are no arguments to
‘VecScatterCreateWithData’ that depend on a template parameter, so a
declaration of ‘VecScatterCreateWithData’ must be available [-fpermissive]
# define LibMeshVecScatterCreate(xin,ix,yin,iy,newctx)
VecScatterCreateWithData(xin,ix,yin,iy,newctx)
^~~~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C:758:10: note: in expansion of macro
‘LibMeshVecScatterCreate’
ierr = LibMeshVecScatterCreate(_vec, is,
^~~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C: In member function ‘virtual void
libMesh::PetscVector<T>::localize(std::__debug::vector<T>&, const
std::__debug::vector<long unsigned int>&) const’:
./include/libmesh/petsc_macro.h:94:58: error: there are no arguments to
‘VecScatterCreateWithData’ that depend on a template parameter, so a
declaration of ‘VecScatterCreateWithData’ must be available [-fpermissive]
# define LibMeshVecScatterCreate(xin,ix,yin,iy,newctx)
VecScatterCreateWithData(xin,ix,yin,iy,newctx)
^~~~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C:811:10: note: in expansion of macro
‘LibMeshVecScatterCreate’
ierr = LibMeshVecScatterCreate(_vec,
^~~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C: In member function ‘virtual void
libMesh::PetscVector<T>::localize(libMesh::numeric_index_type,
libMesh::numeric_index_type, const std::__debug::vector<long unsigned
int>&)’:
./include/libmesh/petsc_macro.h:94:58: error: there are no arguments to
‘VecScatterCreateWithData’ that depend on a template parameter, so a
declaration of ‘VecScatterCreateWithData’ must be available [-fpermissive]
# define LibMeshVecScatterCreate(xin,ix,yin,iy,newctx)
VecScatterCreateWithData(xin,ix,yin,iy,newctx)
^~~~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C:897:12: note: in expansion of macro
‘LibMeshVecScatterCreate’
ierr = LibMeshVecScatterCreate(_vec, is,
^~~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C: In member function ‘virtual void
libMesh::PetscVector<T>::create_subvector(libMesh::NumericVector<T>&, const
std::__debug::vector<long unsigned int>&) const’:
./include/libmesh/petsc_macro.h:94:58: error: there are no arguments to
‘VecScatterCreateWithData’ that depend on a template parameter, so a
declaration of ‘VecScatterCreateWithData’ must be available [-fpermissive]
# define LibMeshVecScatterCreate(xin,ix,yin,iy,newctx)
VecScatterCreateWithData(xin,ix,yin,iy,newctx)
^~~~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C:1321:10: note: in expansion of macro
‘LibMeshVecScatterCreate’
ierr = LibMeshVecScatterCreate(this->_vec,
^~~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C: In instantiation of ‘void
libMesh::PetscVector<T>::localize(libMesh::NumericVector<T>&) const [with T
= double]’:
../src/numerics/petsc_vector.C:1526:16: required from here
./include/libmesh/petsc_macro.h:94:82: error: ‘VecScatterCreateWithData’
was not declared in this scope
# define LibMeshVecScatterCreate(xin,ix,yin,iy,newctx)
VecScatterCreateWithData(xin,ix,yin,iy,newctx)
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C:685:10: note: in expansion of macro
‘LibMeshVecScatterCreate’
ierr = LibMeshVecScatterCreate(_vec, is,
^~~~~~~~~~~~~~~~~~~~~~~
./include/libmesh/petsc_macro.h:94:82: note: suggested alternative:
‘VecScatterCreateToZero’
# define LibMeshVecScatterCreate(xin,ix,yin,iy,newctx)
VecScatterCreateWithData(xin,ix,yin,iy,newctx)
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C:685:10: note: in expansion of macro
‘LibMeshVecScatterCreate’
ierr = LibMeshVecScatterCreate(_vec, is,
^~~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C: In instantiation of ‘void
libMesh::PetscVector<T>::localize(libMesh::NumericVector<T>&, const
std::__debug::vector<long unsigned int>&) const [with T = double]’:
../src/numerics/petsc_vector.C:1526:16: required from here
./include/libmesh/petsc_macro.h:94:82: error: ‘VecScatterCreateWithData’
was not declared in this scope
# define LibMeshVecScatterCreate(xin,ix,yin,iy,newctx)
VecScatterCreateWithData(xin,ix,yin,iy,newctx)
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C:758:10: note: in expansion of macro
‘LibMeshVecScatterCreate’
ierr = LibMeshVecScatterCreate(_vec, is,
^~~~~~~~~~~~~~~~~~~~~~~
CXX src/numerics/libmesh_dbg_la-tensor_tools.lo
./include/libmesh/petsc_macro.h:94:82: note: suggested alternative:
‘VecScatterCreateToZero’
# define LibMeshVecScatterCreate(xin,ix,yin,iy,newctx)
VecScatterCreateWithData(xin,ix,yin,iy,newctx)
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C:758:10: note: in expansion of macro
‘LibMeshVecScatterCreate’
ierr = LibMeshVecScatterCreate(_vec, is,
^~~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C: In instantiation of ‘void
libMesh::PetscVector<T>::localize(std::__debug::vector<T>&, const
std::__debug::vector<long unsigned int>&) const [with T = double]’:
../src/numerics/petsc_vector.C:1526:16: required from here
./include/libmesh/petsc_macro.h:94:82: error: ‘VecScatterCreateWithData’
was not declared in this scope
# define LibMeshVecScatterCreate(xin,ix,yin,iy,newctx)
VecScatterCreateWithData(xin,ix,yin,iy,newctx)
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C:811:10: note: in expansion of macro
‘LibMeshVecScatterCreate’
ierr = LibMeshVecScatterCreate(_vec,
^~~~~~~~~~~~~~~~~~~~~~~
./include/libmesh/petsc_macro.h:94:82: note: suggested alternative:
‘VecScatterCreateToZero’
# define LibMeshVecScatterCreate(xin,ix,yin,iy,newctx)
VecScatterCreateWithData(xin,ix,yin,iy,newctx)
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C:811:10: note: in expansion of macro
‘LibMeshVecScatterCreate’
ierr = LibMeshVecScatterCreate(_vec,
^~~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C: In instantiation of ‘void
libMesh::PetscVector<T>::localize(libMesh::numeric_index_type,
libMesh::numeric_index_type, const std::__debug::vector<long unsigned
int>&) [with T = double; libMesh::numeric_index_type = long unsigned int]’:
../src/numerics/petsc_vector.C:1526:16: required from here
./include/libmesh/petsc_macro.h:94:82: error: ‘VecScatterCreateWithData’
was not declared in this scope
# define LibMeshVecScatterCreate(xin,ix,yin,iy,newctx)
VecScatterCreateWithData(xin,ix,yin,iy,newctx)
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C:897:12: note: in expansion of macro
‘LibMeshVecScatterCreate’
ierr = LibMeshVecScatterCreate(_vec, is,
^~~~~~~~~~~~~~~~~~~~~~~
CXX src/numerics/libmesh_dbg_la-trilinos_epetra_matrix.lo
./include/libmesh/petsc_macro.h:94:82: note: suggested alternative:
‘VecScatterCreateToZero’
# define LibMeshVecScatterCreate(xin,ix,yin,iy,newctx)
VecScatterCreateWithData(xin,ix,yin,iy,newctx)
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C:897:12: note: in expansion of macro
‘LibMeshVecScatterCreate’
ierr = LibMeshVecScatterCreate(_vec, is,
^~~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C: In instantiation of ‘void
libMesh::PetscVector<T>::create_subvector(libMesh::NumericVector<T>&, const
std::__debug::vector<long unsigned int>&) const [with T = double]’:
../src/numerics/petsc_vector.C:1526:16: required from here
./include/libmesh/petsc_macro.h:94:82: error: ‘VecScatterCreateWithData’
was not declared in this scope
# define LibMeshVecScatterCreate(xin,ix,yin,iy,newctx)
VecScatterCreateWithData(xin,ix,yin,iy,newctx)
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C:1321:10: note: in expansion of macro
‘LibMeshVecScatterCreate’
ierr = LibMeshVecScatterCreate(this->_vec,
^~~~~~~~~~~~~~~~~~~~~~~
CXX src/numerics/libmesh_dbg_la-trilinos_epetra_vector.lo
./include/libmesh/petsc_macro.h:94:82: note: suggested alternative:
‘VecScatterCreateToZero’
# define LibMeshVecScatterCreate(xin,ix,yin,iy,newctx)
VecScatterCreateWithData(xin,ix,yin,iy,newctx)
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
../src/numerics/petsc_vector.C:1321:10: note: in expansion of macro
‘LibMeshVecScatterCreate’
ierr = LibMeshVecScatterCreate(this->_vec,
^~~~~~~~~~~~~~~~~~~~~~~
CXX src/numerics/libmesh_dbg_la-trilinos_preconditioner.lo
CXX src/numerics/libmesh_dbg_la-type_tensor.lo
Makefile:17265: recipe for target
'src/numerics/libmesh_dbg_la-petsc_vector.lo' failed
make[2]: *** [src/numerics/libmesh_dbg_la-petsc_vector.lo] Error 1
make[2]: *** Waiting for unfinished jobs....
make[2]: Leaving directory
'/home/chaztikov/src/libmesh-1.4.0/arch-linux-pkgs-64idx'
Makefile:8551: recipe for target '../libmesh_dbg.la' failed
make[1]: *** [../libmesh_dbg.la] Error 2
make[1]: Leaving directory
'/home/chaztikov/src/libmesh-1.4.0/arch-linux-pkgs-64idx/tests'
Makefile:31077: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
Any idea how to work around this? Should I stick to petsc-3.9._?
Thanks!
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