Hello,
I am getting an error with `make check`. I can live with another
compilation that I already have, but if you want the debugging
information, let me know.
** Compilation set-up of PETSc and libmesh
My compilation configuration can be seen here:
- PETSc:
- https://notabug.org/broncodev/petsc-pkgbuild
- commit ed0b0b66dc38da1a2b68be1185ad557d1201c5e6
- main script:
https://notabug.org/broncodev/petsc-pkgbuild/src/ed0b0b66dc38da1a2b68be1185ad557d1201c5e6/PKGBUILD
- extra dependencies:
https://notabug.org/broncodev/petsc-pkgbuild/src/ed0b0b66dc38da1a2b68be1185ad557d1201c5e6/test_optdepends.sh
- This results in the following `configure` flags:
#+begin_EXAMPLE
LDFLAGS=-Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now
--prefix=/usr/petsc/linux-c-opt --CXXOPTFLAGS=-O3 --CFLAGS=-fPIC
-fopenmp -O3 -march=x86-64 -mtune=generic --CXXFLAGS=-fPIC -fopenmp -O3
-march=x86-64 -mtune=generic --FFLAGS=-fPIC -fopenmp -O3 -march=x86-64
-mtune=generic --FCFLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic
--F90FLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic
--F77FLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic
--with-cxx-dialect=C++11 --with-fftw=1 --with-hdf5=1 --with-mpi=1
--with-pic=1 --with-shared-libraries=1 --with-zlib=1
--with-scalar-type=complex --with-hypre=1 --with-mumps=1 --with-fftw=1
--with-hdf5=1 --with-scalapack=1 --with-suitesparse=1 --with-metis=1
--with-parmetis=1 --with-ptscotch=1
--with-ptscotch-lib="[libesmumps.so,libptscotch.so,libptscotcherr.so,libscotch.so,libscotcherr.so,libbz2.so]"
--with-ptscotch-include=/usr/include/scotch --with-superlu=1
--with-superlu-lib=-lsuperlu --with-superlu-include=/usr/include/superlu
--with-eigen=1 --with-eigen-include=/usr/include/eigen3 --with-openmp=1
--with-hwloc=1 --with-hwloc-pkg-config=/usr/lib/pkgconfig/ --with-cgns=1
--with-png=1 --with-png-pkg-config=/usr/lib/pkgconfig/ --with-med=1
#+end_EXAMPLE
- libmesh: https://notabug.org/broncodev/libmesh-pkgbuild
- commit 4286225389795cdacec80b1af669f03c2edabb43
- main script:
https://notabug.org/broncodev/libmesh-pkgbuild/src/4286225389795cdacec80b1af669f03c2edabb43/PKGBUILD
- This results in the following `configure` flags:
#+begin_EXAMPLE
configure: running /bin/sh ./configure --disable-option-checking
'--prefix=/usr' '--enable-petsc-hypre-required' '--with-metis=PETSc'
'--enable-metaphysicl-required' '--enable-vtk-required' '--enable-curl'
'--enable-hdf5' '--enable-complex' '--with-pic' '--enable-mpi'
'--enable-fftw' '--enable-shared' '--enable-unique-id' '--enable-march'
'--enable-ifem' '--enable-nodeconstraint' 'CXXFLAGS=-fPIC -fopenmp -O3
-march=x86-64 -mtune=generic'
'LDFLAGS=-Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now'
'CPPFLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic
-D_FORTIFY_SOURCE=2' 'CFLAGS=-fPIC -fopenmp -O3 -march=x86-64
-mtune=generic' 'FCFLAGS=-fPIC -fopenmp -O3 -march=x86-64
-mtune=generic' 'FFLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic'
'METHODS=opt oprof dbg' 'PETSC_DIR=/usr/petsc/linux-c-opt'
'--enable-dap' '--disable-testsets' 'CXX=mpicxx' 'CC=mpicc' 'F77=mpif77'
'FC=mpif90' 'CPPFLAGS= -fPIC -fopenmp -O3 -march=x86-64 -mtune=generic
-D_FORTIFY_SOURCE=2' 'LIBS=-L/lib -lhdf5 -Wl,-rpath,/lib -ldl '
--cache-file=/dev/null --srcdir=.
#+end_EXAMPLE
** The error is this:
#+begin_EXAMPLE
make check-TESTS
make[4]: Entering directory
'/folder/libmesh/examples/reduced_basis/reduced_basis_ex7'
,***************************************************************
,* Running Example reduced_basis_ex7:
,* ./example-dbg -online_mode 0 -ksp_type preonly -pc_type lu
-pc_factor_mat_solver_type mumps
,***************************************************************
Error: Solver is unknown.
WARNING! There are options you set that were not used!
WARNING! could be spelling mistake, etc!
There are 4 unused database options. They are:
Option left: name:-ksp_type value: preonly
Option left: name:-online_mode value: 0
Option left: name:-pc_factor_mat_solver_type value: mumps
Option left: name:-pc_type value: lu
----------------------------------------------------------------------------
| Reference count information
|
----------------------------------------------------------------------------
| N7libMesh4ElemE reference count information:
| Creations: 1
| Destructions: 1
| N7libMesh9DofObjectE reference count information:
| Creations: 1
| Destructions: 1
----------------------------------------------------------------------------
FAIL: run.sh
====================================================
1 of 1 test failed
Please report to libmesh-users@lists.sourceforge.net
====================================================
make[4]: *** [Makefile:1009: check-TESTS] Error 1
make[4]: Leaving directory
'/folder/libmesh/examples/reduced_basis/reduced_basis_ex7'
make[3]: *** [Makefile:1136: check-am] Error 2
make[3]: Leaving directory
'/folder/libmesh/examples/reduced_basis/reduced_basis_ex7'
make[2]: *** [Makefile:1138: check] Error 2
make[2]: Leaving directory
'/folder/libmesh/examples/reduced_basis/reduced_basis_ex7'
make[1]: *** [Makefile:727: check-recursive] Error 1
make[1]: Leaving directory '/folder/libmesh/examples'
make: *** [Makefile:31749: check-recursive] Error 1
#+end_EXAMPLE
If you need more information, please, let me know
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