On 2019-12-30 17:33, Stogner, Roy H wrote:
----8<---- snip
This (plus a bootstrap commit) is now also a PR at
https://github.com/libMesh/libmesh/pull/2388 - thanks again.
Thanks to you for libMesh. I saw the comments on the PR, and I want to
share the output of my =configure= (attached). In summary:
exodus........................... : yes
If you need more information, let me know, although you can see how I
compile with the repos https://notabug.org/broncodev. In particular,
remember that I forced the library with =netcdf.m4= (look for this
#+begin_src autoconf
LIBS="$LIBS -lnetcdf -L/usr/lib"
CPPFLAGS="$CPPFLAGS -I/usr/include"
#+end_src
which may be different in your system), and this in my PKGBUILD (the
recipe to compile):
#+begin_SRC bash
[[ -f /usr/include/netcdf.h ]] && \
sed -i "s-\(ac_subdirs_all='\)contrib/netcdf/v4-\1-g;
s-\(subdirs=\"\$subdirs\) contrib/netcdf/v4-\1-g" configure
#+end_SRC
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==> Making package: libmesh-petsc cpp03_final.r3961.g19706028f-1 (Mon 30 Dec
2019 22:05:03 CET)
==> Checking runtime dependencies...
==> Checking buildtime dependencies...
==> WARNING: Using existing $srcdir/ tree
==> Starting pkgver()...
==> Removing existing $pkgdir/ directory...
==> Starting build()...
---------------------------------------------
----------- Configuring libMesh -------------
---------------------------------------------
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checking for gcc architecture flag... -march=amdfam10
configure: WARNING: C++11 is now always required for libMesh
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<<< Configuring libMesh with methods "opt dbg" >>>
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<<< Configuring library with getpwuid >>>
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checking size of short int... 2
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---------------------------------------------
----- Done configuring compiler features ----
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configuring size of dof_id... 4
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---------------------------------------------
-- Done configuring core library features ---
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----------------------------------------------
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----------------------------------------------
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config.status: creating examples/reduced_basis/reduced_basis_ex4/Makefile
config.status: creating examples/reduced_basis/reduced_basis_ex5/Makefile
config.status: creating examples/reduced_basis/reduced_basis_ex6/Makefile
config.status: creating examples/reduced_basis/reduced_basis_ex7/Makefile
config.status: creating examples/transient/transient_ex1/Makefile
config.status: creating examples/transient/transient_ex2/Makefile
config.status: creating examples/vector_fe/vector_fe_ex1/Makefile
config.status: creating examples/vector_fe/vector_fe_ex2/Makefile
config.status: creating examples/vector_fe/vector_fe_ex3/Makefile
config.status: creating examples/vector_fe/vector_fe_ex4/Makefile
config.status: creating examples/vector_fe/vector_fe_ex5/Makefile
config.status: creating examples/Makefile
config.status: creating include/libmesh_config.h.tmp
config.status: include/libmesh_config.h.tmp is unchanged
config.status: executing include/libmesh_config.h commands
config.status: creating include/libmesh_config.h - prefix LIBMESH for
include/libmesh_config.h.tmp defines
config.status: include/libmesh_config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
=== configuring in contrib/metaphysicl
(/home/edgar/Documentos/Linux/Parabola/pkg/libmesh/build/contrib/metaphysicl)
configure: running /bin/sh
/home/edgar/Documentos/Linux/Parabola/pkg/libmesh/src/libmesh/contrib/metaphysicl/configure
--disable-option-checking '--prefix=/usr' '--with-metis=PETSc'
'--enable-cxx11-required' '--enable-metaphysicl-required'
'--enable-vtk-required' '--enable-curl' '--enable-hdf5' '--with-pic'
'--enable-mpi' '--enable-complex' '--enable-netcdf'
'--with-netcdf=/usr/include' '--with-netcdf-lib=/usr/lib' '--enable-fftw'
'--with-nlopt=/usr/include' '--with-nlopt-lib=/usr/lib' '--enable-mumps'
'--with-mumps=/usr/include' '--with-mumps-lib=/usr/lib' '--enable-superlu'
'--enable-shared' '--enable-unique-id' '--enable-march' '--enable-ifem'
'--enable-nodeconstraint' 'CXXFLAGS=-fPIC -fopenmp -march=amdfam10
-mtune=generic' 'LDFLAGS=-Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now'
'CPPFLAGS=-fPIC -fopenmp -march=amdfam10 -mtune=generic -O2
-D_FORTIFY_SOURCE=2' 'CFLAGS=-fPIC -fopenmp -march=amdfam10 -mtune=generic'
'FCFLAGS=-fPIC -fopenmp -march=amdfam10 -mtune=generic' 'FFLAGS=-fPIC -fopenmp
-march=amdfam10 -mtune=generic' 'METHODS=opt dbg'
'PETSC_DIR=/usr/petsc/linux-c-opt' '--enable-dap' '--disable-testsets'
'CXX=mpicxx' 'CC=mpicc' 'F77=mpif77' 'FC=mpif90' 'CPPFLAGS= -fPIC -fopenmp
-march=amdfam10 -mtune=generic -O2 -D_FORTIFY_SOURCE=2 -I/usr/include'
'LIBS=-L/lib -lhdf5 -Wl,-rpath,/lib -ldl -lnetcdf -L/usr/lib'
--cache-file=/dev/null
--srcdir=/home/edgar/Documentos/Linux/Parabola/pkg/libmesh/src/libmesh/contrib/metaphysicl
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '1000' is supported by ustar format... yes
checking whether GID '1000' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking whether make supports nested variables... (cached) yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... mpicc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to accept ISO C89... none needed
checking whether mpicc understands -c and -o together... yes
checking dependency style of mpicc... gcc3
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by mpicc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1879296
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu
format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format...
func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from mpicc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... mpicc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if mpicc supports -fno-rtti -fno-exceptions... no
checking for mpicc option to produce PIC... -fPIC -DPIC
checking if mpicc PIC flag -fPIC -DPIC works... yes
checking if mpicc static flag -static works... no
checking if mpicc supports -c -o file.o... yes
checking if mpicc supports -c -o file.o... (cached) yes
checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared
libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking Major version... 0
checking Minor version... 6
checking Point version... 0
checking for gcc... (cached) mpicc
checking whether we are using the GNU C compiler... (cached) yes
checking whether mpicc accepts -g... (cached) yes
checking for mpicc option to accept ISO C89... (cached) none needed
checking whether mpicc understands -c and -o together... (cached) yes
checking dependency style of mpicc... (cached) gcc3
checking whether we are using the GNU C++ compiler... yes
checking whether mpicxx accepts -g... yes
checking dependency style of mpicxx... gcc3
checking how to run the C++ preprocessor... mpicxx -E
checking for ld used by mpicxx... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared
libraries... yes
checking for mpicxx option to produce PIC... -fPIC -DPIC
checking if mpicxx PIC flag -fPIC -DPIC works... yes
checking if mpicxx static flag -static works... no
checking if mpicxx supports -c -o file.o... yes
checking if mpicxx supports -c -o file.o... (cached) yes
checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared
libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether we are using the GNU Fortran compiler... yes
checking whether mpif90 accepts -g... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for mpif90 option to produce PIC... -fPIC
checking if mpif90 PIC flag -fPIC works... yes
checking if mpif90 static flag -static works... no
checking if mpif90 supports -c -o file.o... yes
checking if mpif90 supports -c -o file.o... (cached) yes
checking whether the mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared
libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether mpicxx supports C++14 features with -std=c++14... yes
checking CXXFLAGS for maximum warnings... -Wall
checking masa.h usability... no
checking masa.h presence... no
checking for masa.h... no
configure: optional MASA library not found
checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for Boost headers version >= 1.47.0... yes
checking for Boost's header version... 1_71
checking for the toolset name used by Boost for mpicxx -std=c++14... configure:
WARNING: could not figure out which toolset name to use for mpicxx -std=c++14
checking for the flags needed to use pthreads... conftest.cpp: In function 'int
main()':
conftest.cpp:32:24: warning: null argument where non-null required (argument 1)
[-Wnonnull]
32 | pthread_attr_init(0); pthread_cleanup_push(0, 0);
| ^
conftest.cpp:33:27: warning: null argument where non-null required (argument 1)
[-Wnonnull]
33 | pthread_create(0,0,0,0); pthread_cleanup_pop(0);
| ^
conftest.cpp:33:27: warning: null argument where non-null required (argument 3)
[-Wnonnull]
conftest.cpp:31:27: warning: 'th' is used uninitialized in this function
[-Wuninitialized]
31 | pthread_t th; pthread_join(th, 0);
| ~~~~~~~~~~~~^~~~~~~
-pthread
configure: /vexcl/vexcl.hpp not found
configure: /include/vexcl/vexcl.hpp not found
checking whether we are using the Microsoft C++ compiler... no
checking CL/cl.h usability... yes
checking CL/cl.h presence... yes
checking for CL/cl.h... yes
checking OpenCL/cl.h usability... no
checking OpenCL/cl.h presence... no
checking for OpenCL/cl.h... no
checking windows.h usability... no
checking windows.h presence... no
checking for windows.h... no
checking for OpenCL library... -lOpenCL
checking boost/system/error_code.hpp usability... yes
checking boost/system/error_code.hpp presence... yes
checking for boost/system/error_code.hpp... yes
checking for the Boost system library... yes
checking boost/chrono.hpp usability... yes
checking boost/chrono.hpp presence... yes
checking for boost/chrono.hpp... yes
checking for the Boost chrono library... (cached) yes
checking boost/date_time/posix_time/posix_time.hpp usability... yes
checking boost/date_time/posix_time/posix_time.hpp presence... yes
checking for boost/date_time/posix_time/posix_time.hpp... yes
checking for the Boost date_time library... (cached) yes
checking for boost/system/error_code.hpp... (cached) yes
checking for the Boost system library... (cached) yes
checking boost/filesystem/path.hpp usability... yes
checking boost/filesystem/path.hpp presence... yes
checking for boost/filesystem/path.hpp... yes
checking for the Boost filesystem library... (cached) yes
checking for boost/system/error_code.hpp... (cached) yes
checking for the Boost system library... (cached) yes
checking for boost/system/error_code.hpp... (cached) yes
checking for the Boost system library... (cached) yes
checking boost/thread.hpp usability... yes
checking boost/thread.hpp presence... yes
checking for boost/thread.hpp... yes
checking for the Boost thread library... (cached) yes
checking whether we are using the Microsoft C++ compiler... (cached) no
checking for CL/cl.h... (cached) yes
checking for OpenCL/cl.h... (cached) no
checking for windows.h... (cached) no
checking for OpenCL library... (cached) -lOpenCL
checking vexcl/vexcl.hpp usability... no
checking vexcl/vexcl.hpp presence... no
checking for vexcl/vexcl.hpp... no
configure: optional VEXCL library not found
checking for git... /usr/bin/git
checking for doxygen... /usr/bin/doxygen
checking for perl... /usr/bin/perl
checking for dot... /usr/bin/dot
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for egrep... /usr/bin/egrep
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating doxygen/txt_common/about_vpath.page
config.status: creating src/utilities/include/metaphysicl/metaphysicl_version.h
config.status: creating doxygen/Makefile
config.status: creating doxygen/metaphysicl.dox
config.status: creating Makefile
config.status: creating metaphysicl.pc
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating metaphysicl_config.h.tmp
config.status: metaphysicl_config.h.tmp is unchanged
config.status: executing metaphysicl_config.h commands
config.status: creating metaphysicl_config.h - prefix METAPHYSICL for
metaphysicl_config.h.tmp defines
config.status: metaphysicl_config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
checking for git... (cached) /usr/bin/git
----------------------------------- SUMMARY -----------------------------------
Package version............... : metaphysicl-0.6.0
C++ compiler.................. : mpicxx -std=c++14
C++ compiler flags............ : -fPIC -fopenmp -march=amdfam10 -mtune=generic
-Wall
Install dir................... : /usr
Build user.................... : edgar
Build host.................... : localhost
Configure date................ : 2019-12-30 22:06
Build architecture............ : x86_64-pc-linux-gnu
Git revision number........... : external
Optional Packages for Testing:
MASA........................ : no
VEXCL....................... : no
-------------------------------------------------------------------------------
Configure complete, now type 'make' and then 'make install'.
=== configuring in contrib/timpi
(/home/edgar/Documentos/Linux/Parabola/pkg/libmesh/build/contrib/timpi)
configure: running /bin/sh
/home/edgar/Documentos/Linux/Parabola/pkg/libmesh/src/libmesh/contrib/timpi/configure
--disable-option-checking '--prefix=/usr' '--with-metis=PETSc'
'--enable-cxx11-required' '--enable-metaphysicl-required'
'--enable-vtk-required' '--enable-curl' '--enable-hdf5' '--with-pic'
'--enable-mpi' '--enable-complex' '--enable-netcdf'
'--with-netcdf=/usr/include' '--with-netcdf-lib=/usr/lib' '--enable-fftw'
'--with-nlopt=/usr/include' '--with-nlopt-lib=/usr/lib' '--enable-mumps'
'--with-mumps=/usr/include' '--with-mumps-lib=/usr/lib' '--enable-superlu'
'--enable-shared' '--enable-unique-id' '--enable-march' '--enable-ifem'
'--enable-nodeconstraint' 'CXXFLAGS=-fPIC -fopenmp -march=amdfam10
-mtune=generic' 'LDFLAGS=-Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now'
'CPPFLAGS=-fPIC -fopenmp -march=amdfam10 -mtune=generic -O2
-D_FORTIFY_SOURCE=2' 'CFLAGS=-fPIC -fopenmp -march=amdfam10 -mtune=generic'
'FCFLAGS=-fPIC -fopenmp -march=amdfam10 -mtune=generic' 'FFLAGS=-fPIC -fopenmp
-march=amdfam10 -mtune=generic' 'METHODS=opt dbg'
'PETSC_DIR=/usr/petsc/linux-c-opt' '--enable-dap' '--disable-testsets'
'CXX=mpicxx' 'CC=mpicc' 'F77=mpif77' 'FC=mpif90' 'CPPFLAGS= -fPIC -fopenmp
-march=amdfam10 -mtune=generic -O2 -D_FORTIFY_SOURCE=2 -I/usr/include'
'LIBS=-L/lib -lhdf5 -Wl,-rpath,/lib -ldl -lnetcdf -L/usr/lib'
--cache-file=/dev/null
--srcdir=/home/edgar/Documentos/Linux/Parabola/pkg/libmesh/src/libmesh/contrib/timpi
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '1000' is supported by ustar format... yes
checking whether GID '1000' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking whether make supports nested variables... (cached) yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for a sed that does not truncate output... /usr/bin/sed
checking Major version... 0
checking Minor version... 1
checking Point version... 0
checking whether make supports the include directive... yes (GNU style)
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether mpicxx accepts -g... yes
checking dependency style of mpicxx... gcc3
<<< C++ compiler is unknown but accepted gcc version >>>
checking whether mpicxx supports C++11 features by default... yes
<<< Configuring with methods "opt dbg" >>>
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether mpif77 accepts -g... yes
checking for gcc... mpicc
checking whether we are using the GNU C compiler... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to accept ISO C89... none needed
checking whether mpicc understands -c and -o together... yes
checking dependency style of mpicc... gcc3
checking how to run the C preprocessor... mpicc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking how to run the C++ preprocessor... mpicxx -E
Trying to find MPI via PETSc configuration
checking /usr/petsc/linux-c-opt/include/petscversion.h usability... yes
checking /usr/petsc/linux-c-opt/include/petscversion.h presence... yes
checking for /usr/petsc/linux-c-opt/include/petscversion.h... yes
<<< Attempting to configure library with MPI from PETSC config... >>>
<<< Found PETSc 3.12.2 installation in /usr/petsc/linux-c-opt ... >>>
checking whether we can compile a trivial PETSc program... yes
---------------------------------------------
------- Configuring optional features -------
---------------------------------------------
<<< Configuring library with deprecated code support >>>
<<< Configuring library with exception throwing support >>>
<<< Configuring library with compile timestamps >>>
<<< Configuring library with warnings >>>
configuring size of processor_id... 4
---------------------------------------------
----- Done configuring optional features ----
---------------------------------------------
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for fgrep... /usr/bin/grep -F
checking for ld used by mpicc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1879296
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu
format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format...
func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from mpicc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if mpicc supports -fno-rtti -fno-exceptions... no
checking for mpicc option to produce PIC... -fPIC -DPIC
checking if mpicc PIC flag -fPIC -DPIC works... yes
checking if mpicc static flag -static works... no
checking if mpicc supports -c -o file.o... yes
checking if mpicc supports -c -o file.o... (cached) yes
checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared
libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... mpicxx -E
checking for ld used by mpicxx... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared
libraries... yes
checking for mpicxx option to produce PIC... -fPIC -DPIC
checking if mpicxx PIC flag -fPIC -DPIC works... yes
checking if mpicxx static flag -static works... no
checking if mpicxx supports -c -o file.o... yes
checking if mpicxx supports -c -o file.o... (cached) yes
checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared
libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for mpif77 option to produce PIC... -fPIC
checking if mpif77 PIC flag -fPIC works... yes
checking if mpif77 static flag -static works... no
checking if mpif77 supports -c -o file.o... yes
checking if mpif77 supports -c -o file.o... (cached) yes
checking whether the mpif77 linker (/usr/bin/ld -m elf_x86_64) supports shared
libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for git... /usr/bin/git
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating src/utilities/include/timpi/timpi_version.h
config.status: creating Makefile
config.status: creating timpi.pc
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating src/utilities/include/timpi/timpi_config.h.tmp
config.status: src/utilities/include/timpi/timpi_config.h.tmp is unchanged
config.status: executing src/utilities/include/timpi/timpi_config.h commands
config.status: creating src/utilities/include/timpi/timpi_config.h - prefix
TIMPI for src/utilities/include/timpi/timpi_config.h.tmp defines
config.status: src/utilities/include/timpi/timpi_config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
checking for git... (cached) /usr/bin/git
----------------------------------- SUMMARY -----------------------------------
Package version............... : timpi-0.1.0
C++ compiler.................. : mpicxx
Build Methods...................... : opt dbg
CPPFLAGS...(opt)................... : -DNDEBUG -fPIC -fopenmp -march=amdfam10
-mtune=generic -O2 -D_FORTIFY_SOURCE=2 -I/usr/include
CXXFLAGS...(opt)................... : -O2 -felide-constructors -funroll-loops
-fstrict-aliasing -Wdisabled-optimization -fPIC -fopenmp -march=amdfam10
-mtune=generic
CPPFLAGS...(dbg)................... : -DDEBUG -fPIC -fopenmp -march=amdfam10
-mtune=generic -O2 -D_FORTIFY_SOURCE=2 -I/usr/include
CXXFLAGS...(dbg)................... : -O0 -felide-constructors -g -pedantic -W
-Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses
-Woverloaded-virtual -fPIC -fopenmp -march=amdfam10 -mtune=generic
Install dir................... : /usr
Build user.................... : edgar
Build host.................... : localhost
Configure date................ : 2019-12-30 22:06
Build architecture............ : x86_64-pc-linux-gnu
Git revision number........... : external
-------------------------------------------------------------------------------
Optional Packages for Testing:
MPI......................... : yes
timpi_optional_INCLUDES..... : -I/usr/petsc/linux-c-opt/include
-I/usr/petsc/linux-c-opt//include -I/usr/petsc/linux-c-opt/include
-I/usr/include/superlu -I/usr/include/scotch -I/usr/include/eigen3
timpi_optional_LIBS......... : -Wl,-rpath,/usr/petsc/linux-c-opt/lib
-L/usr/petsc/linux-c-opt/lib -Wl,-rpath,/usr/lib/openmpi -L/usr/lib/openmpi
-Wl,-rpath,/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0
-L/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0 -lpetsc -lHYPRE -lcmumps -ldmumps
-lsmumps -lzmumps -lmumps_common -lpord -lscalapack -lumfpack -lklu -lcholmod
-lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lsuperlu -lfftw3_mpi
-lfftw3 -llapack -lblas -lopenblas -lesmumps -lptscotch -lptscotcherr -lscotch
-lscotcherr -lbz2 -lhwloc -lcgns -lmedC -lmed -lhdf5hl_fortran -lhdf5_fortran
-lhdf5_hl -lhdf5 -lmetis -lm -lz -lX11 -lOpenCL -lyaml -lstdc++ -ldl
-lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm
-lgfortran -lm -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl
Configure complete, now type \'make\' and then \'make install\'.
----------------------------------- SUMMARY -----------------------------------
Package version.................... : libmesh-1.6.0-pre
C++ compiler type.................. : gcc-other
C++ compiler....................... : mpicxx
C compiler......................... : mpicc
Fortran compiler................... : mpif90
Build Methods...................... : opt dbg
CPPFLAGS...(opt)................... : -DNDEBUG -fPIC -fopenmp -march=amdfam10
-mtune=generic -O2 -D_FORTIFY_SOURCE=2 -I/usr/include
CXXFLAGS...(opt)................... : -march=amdfam10 -O2 -felide-constructors
-funroll-loops -fstrict-aliasing -Wdisabled-optimization -fopenmp -fPIC
-fopenmp -march=amdfam10 -mtune=generic
CFLAGS.....(opt)................... : -O2 -funroll-loops -fstrict-aliasing
-fopenmp -fPIC -fopenmp -march=amdfam10 -mtune=generic
CPPFLAGS...(dbg)................... : -DDEBUG -fPIC -fopenmp -march=amdfam10
-mtune=generic -O2 -D_FORTIFY_SOURCE=2 -I/usr/include
CXXFLAGS...(dbg)................... : -O0 -felide-constructors -g -pedantic -W
-Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses
-Woverloaded-virtual -fopenmp -fPIC -fopenmp -march=amdfam10 -mtune=generic
CFLAGS.....(dbg)................... : -g -Wimplicit -fopenmp -fPIC -fopenmp
-march=amdfam10 -mtune=generic
Any warnings-to-errors flags....... :
Any extra paranoid warning flags... :
Install dir........................ : /usr
Build user......................... : edgar
Build host......................... : localhost
Build architecture................. : x86_64-pc-linux-gnu
Git revision....................... : 19706028f24a0f1931136e921b0e55e7eedf9a84
Library Features:
library warnings................. : yes
library deprecated code support.. : yes
adaptive mesh refinement......... : yes
blocked matrix/vector storage.... : no
complex variables................ : yes
example suite.................... : yes
ghosted vectors.................. : yes
high-order shape functions....... : yes
unique-id support................ : yes
id size (boundaries)............. : 2 bytes
id size (dofs)................... : 4 bytes
id size (unique)................. : 8 bytes
id size (processors)............. : 4 bytes
id size (subdomains)............. : 2 bytes
infinite elements................ : yes
Dirichlet constraints............ : yes
node constraints................. : yes
parallel mesh.................... : no
performance logging.............. : no
periodic boundary conditions..... : yes
reference counting............... : yes
shape function 2nd derivatives... : yes
stack trace files................ : no
track node valence............... : yes
variational smoother............. : yes
xdr binary I/O................... : yes
Optional Packages:
boost............................ : yes
capnproto........................ : no
cppunit.......................... : no
curl............................. : yes
eigen............................ : yes
exodus........................... : yes
version....................... : v5.22
fparser.......................... : yes
build from version............ : release
glpk............................. : yes
gmv.............................. : yes
gzstream......................... : yes
hdf5............................. : yes
laspack.......................... : no
libhilbert....................... : yes
metaphysicl...................... : yes
metis............................ : yes
mpi.............................. : yes
nanoflann........................ : yes
nemesis.......................... : yes
version....................... : v5.22
netcdf........................... : yes
version....................... : 4.7.1
nlopt............................ : yes
parmetis......................... : no
petsc............................ : yes
version....................... : 3.12.2
qhull............................ : yes
sfcurves......................... : no
slepc............................ : no
thread model..................... : pthread
c++ rtti ........................ : yes
tecio............................ : yes
tecplot...(vendor binaries)...... : no
tetgen........................... : no
triangle......................... : no
trilinos......................... : yes
AztecOO....................... :
NOX........................... :
ML............................ :
Tpetra........................ :
DTK........................... :
Ifpack........................ :
Epetra........................ :
EpetraExt..................... :
vtk.............................. : yes
version....................... : 8.2.0
libmesh_optional_INCLUDES........ : -I/usr/include/curl -I -I/usr/include
-I/usr/include/eigen3 -I/usr/include/vtk -I/usr/petsc/linux-c-opt/include
-I/usr/petsc/linux-c-opt//include -I/usr/include/superlu -I/usr/include/scotch
-I/usr/include/tirpc
libmesh_optional_LIBS............ : -lhdf5_cpp -lcurl -lnlopt -lglpk
-lvtkIOCore -lvtkCommonCore -lvtkCommonDataModel -lvtkFiltersCore -lvtkIOXML
-lvtkImagingCore -lvtkIOImage -lvtkImagingMath -lvtkIOParallelXML
-lvtkParallelMPI -lvtkParallelCore -lpetsc -lHYPRE -lcmumps -ldmumps -lsmumps
-lzmumps -lmumps_common -lpord -lscalapack -lumfpack -lklu -lcholmod -lbtf
-lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lsuperlu -lfftw3_mpi
-lfftw3 -llapack -lblas -lopenblas -lesmumps -lptscotch -lptscotcherr -lscotch
-lscotcherr -lbz2 -lhwloc -lcgns -lmedC -lmed -lhdf5hl_fortran -lhdf5_fortran
-lhdf5_hl -lhdf5 -lmetis -lz -lX11 -lOpenCL -lyaml -lmpi_usempif08
-lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lgcc_s -lpthread
-lquadmath -lstdc++ -ldl -ltirpc -L/lib -Wl,-rpath,/lib -L/usr/lib
-Wl,-rpath,/usr/lib -Wl,-rpath,/usr/petsc/linux-c-opt/lib
-L/usr/petsc/linux-c-opt/lib -Wl,-rpath,/usr/lib/openmpi -L/usr/lib/openmpi
-Wl,-rpath,/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0
-L/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0
-------------------------------------------------------------------------------
Configure complete, now type 'make' and then 'make install'.
---------------------------------------------
--------- Done Configuring libMesh ----------
---------------------------------------------
Process makepkg finished
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