I didn't read the code in detail, but is the fix as simple as
#include "libmesh/sparse_matrix.h"
?
--
John
On Mon, Aug 16, 2021 at 10:06 AM edgar <edgar...@cryptolab.net> wrote:
> Hello,
>
> I'm sorry to bother you. I'm getting an error, and I dont' know how to
> solve it. I am trying to restructure some examples from the
> /systems_of_equations/ directory into a single program.
>
> I am compiling in debug mode with mpicxx. The error message reads:
> =invalid use of incomplete type 'class
> libMesh::SparseMatrix<std::complex<double> >'=. The message is next, and
> the offending code is below (I think attachments are scrubbed-off).
> Thank you very much for your time and patience. If it lacks clarity or
> you need anything else, just let me know.
>
> #+caption: The compiler tells me this
> #+begin_example
> src/main.cpp: In function 'void asm_subfun(KE&, KEV&, FE&, FEV&,
> libMesh::EquationSystems&, const string&)':
> src/main.cpp:193:7: warning: invalid use of incomplete type 'class
> libMesh::SparseMatrix<std::complex<double> >'
> 193 | matrix.add_matrix (Ke, dof_indices);
> | ^~~~~~
> In file included from
> src/../include/getpot_bc_2_linear_implicit_eq_sys.h:5,
> from src/main.cpp:1:
> /usr/include/libmesh/dof_map.h:74:29: note: declaration of 'class
> libMesh::SparseMatrix<std::complex<double> >'
> 74 | template <typename T> class SparseMatrix;
> | ^~~~~~~~~~~~
> src/main.cpp:194:17: warning: invalid use of incomplete type 'class
> libMesh::NumericVector<std::complex<double> >'
> 194 | system.rhs->add_vector (Fe, dof_indices);
> | ^~
> In file included from /usr/include/libmesh/dof_object.h:25,
> from /usr/include/libmesh/mesh_base.h:24,
> from /usr/include/libmesh/elem_range.h:24,
> from /usr/include/libmesh/dof_map.h:30,
> from
> src/../include/getpot_bc_2_linear_implicit_eq_sys.h:5,
> from src/main.cpp:1:
> /usr/include/libmesh/int_range.h:34:29: note: declaration of 'class
> libMesh::NumericVector<std::complex<double> >'
> 34 | template <typename T> class NumericVector;
> | ^~~~~~~~~~~~~
> src/main.cpp: In instantiation of 'void asm_subfun(KE&, KEV&, FE&,
> FEV&, libMesh::EquationSystems&, const string&) [with KE =
> libMesh::DenseMatrix<std::complex<double> >; KEV =
> libMesh::DenseSubMatrix<std::complex<double> > [1][1]; FE =
> libMesh::DenseVector<std::complex<double> >; FEV =
> libMesh::DenseSubVector<std::complex<double> > [1]; std::string =
> std::__cxx11::basic_string<char>]':
> src/main.cpp:351:15: required from here
> src/main.cpp:193:14: error: invalid use of incomplete type 'class
> libMesh::SparseMatrix<std::complex<double> >'
> 193 | matrix.add_matrix (Ke, dof_indices);
> | ~~~~~~~^~~~~~~~~~
> In file included from
> src/../include/getpot_bc_2_linear_implicit_eq_sys.h:5,
> from src/main.cpp:1:
> /usr/include/libmesh/dof_map.h:74:29: note: declaration of 'class
> libMesh::SparseMatrix<std::complex<double> >'
> 74 | template <typename T> class SparseMatrix;
> | ^~~~~~~~~~~~
> src/main.cpp:194:19: error: invalid use of incomplete type 'class
> libMesh::NumericVector<std::complex<double> >'
> 194 | system.rhs->add_vector (Fe, dof_indices);
> | ~~~~~~~^~~~~~~~~~
> #+end_example
>
> #+name: asm_subfunc
> #+caption: This function is called by =assembly_elasticity=
> #+begin_src c++
> template <typename KE, typename KEV, typename FE, typename FEV>
> void
> asm_subfun (KE &Ke,
> KEV &Ke_var,
> FE &Fe,
> FEV &Fe_var,
> libMesh::EquationSystems &es,
> const std::string &libmesh_dbg_var (system_name)) {
>
> libmesh_assert_equal_to (system_name,
> "LinearIsotropicSystem");
> libMesh::LinearImplicitSystem &system =
> es.get_system<libMesh::LinearImplicitSystem> (
> "LinearIsotropicSystem");
>
> const libMesh::MeshBase &mesh = es.get_mesh ();
>
> const unsigned int mesh_dim = mesh.mesh_dimension ();
>
> const unsigned int u_var = system.variable_number ("u");
>
> const libMesh::DofMap &dof_map = system.get_dof_map ();
> libMesh::FEType fe_type = dof_map.variable_type (u_var);
> std::unique_ptr<libMesh::FEBase> fe (
> libMesh::FEBase::build (mesh_dim, fe_type));
> libMesh::QGauss qrule (
> mesh_dim, fe_type.default_quadrature_order ());
> fe->attach_quadrature_rule (&qrule);
>
> std::unique_ptr<libMesh::FEBase> fe_face (
> libMesh::FEBase::build (mesh_dim, fe_type));
> libMesh::QGauss qface (
> mesh_dim - 1, fe_type.default_quadrature_order ());
> fe_face->attach_quadrature_rule (&qface);
>
> const std::vector<libMesh::Real> &JxW = fe->get_JxW ();
> const std::vector<std::vector<libMesh::Real>> &phi =
> fe->get_phi ();
> const std::vector<std::vector<libMesh::RealGradient>>
> &dphi = fe->get_dphi ();
>
> std::vector<libMesh::dof_id_type> dof_indices;
> std::vector<std::vector<libMesh::dof_id_type>> dof_indices_var (
> 3);
>
> libMesh::SparseMatrix<libMesh::Number> &matrix =
> system.get_system_matrix ();
>
> auto lame_lambda =
> es.parameters.get<libMesh::Real>("lame_lambda");
> auto lame_mu = es.parameters.get<libMesh::Real>("lame_mu");
>
> for (const auto &elem :
> mesh.active_local_element_ptr_range ()) {
> dof_map.dof_indices (elem, dof_indices);
> for (unsigned int var = 0; var < mesh_dim; var++)
> dof_map.dof_indices (
> elem, dof_indices_var[var], var);
>
> const unsigned int n_dofs = dof_indices.size ();
> const unsigned int n_var_dofs =
> dof_indices_var[0].size ();
>
> fe->reinit (elem);
>
> Ke.resize (n_dofs, n_dofs);
> Fe.resize (n_dofs);
>
> for (unsigned int var_i = 0; var_i < 3; var_i++)
> for (unsigned int var_j = 0; var_j < 3; var_j++)
> Ke_var[var_i][var_j].reposition (
> var_i * n_var_dofs,
> var_j * n_var_dofs,
> n_var_dofs,
> n_var_dofs);
> for (unsigned int var = 0; var < 3; var++)
> Fe_var[var].reposition (var * n_var_dofs, n_var_dofs);
>
> for (unsigned int qp = 0; qp < qrule.n_points (); qp++) {
> for (unsigned int dof_i = 0; dof_i < n_var_dofs; dof_i++)
> for (unsigned int dof_j = 0; dof_j < n_var_dofs;
> dof_j++)
> for (unsigned int i = 0; i < 3; i++)
> for (unsigned int j = 0; j < 3; j++)
> for (unsigned int k = 0; k < 3; k++)
> for (unsigned int l = 0; l < 3; l++)
> Ke_var[i][k](dof_i, dof_j) +=
> JxW[qp] *
> linear_isotropic_elasticity_comp
> (i, j, k, l) *
> dphi[dof_j][qp](l) *
> dphi[dof_i][qp](j);
>
> libMesh::VectorValue<libMesh::Number> f_vec (0., 0., -1.);
> for (unsigned int dof_i = 0; dof_i < n_var_dofs;
> dof_i++)
> for (unsigned int i = 0; i < 3; i++)
> Fe_var[i](dof_i) += JxW[qp] * (f_vec (i) *
> phi[dof_i][qp]);
> } // end of quadrature point loop
>
> dof_map.constrain_element_matrix_and_vector (Ke, Fe,
> dof_indices);
>
> matrix.add_matrix (Ke, dof_indices);
> system.rhs->add_vector (Fe, dof_indices);
> } // end of element loop
> }
> #+end_src
>
> #+name: assemble_elasticity
> #+caption: This is a prototype function which is not called by anything
> yet
> #+begin_src C++
> void
> assemble_elasticity (
> libMesh::EquationSystems & es,
> const std::string &libmesh_dbg_var (system_name)) {
>
> const libMesh::MeshBase &mesh = es.get_mesh ();
> const unsigned int mesh_dim = mesh.mesh_dimension ();
>
> libMesh::DenseMatrix<libMesh::Number> Ke;
> libMesh::DenseVector<libMesh::Number> Fe;
>
> if (mesh_dim == 1) {
> libMesh::DenseSubMatrix<libMesh::Number> Ke_var[1][1] = {
> { libMesh::DenseSubMatrix<libMesh::Number> (Ke) }};
> libMesh::DenseSubVector<libMesh::Number> Fe_var[1] = {
> libMesh::DenseSubVector<libMesh::Number> (Fe)};
> asm_subfun(Ke, Ke_var, Fe, Fe_var, es, system_name);
> }
> }
> #+end_src
>
> #+name: libmesh_headers
> #+caption: These are the headers that I use which come from libMesh
> (there are more, for unrelated local functions)
> #+begin_src C++
> #include "libmesh/boundary_info.h"
> #include "libmesh/const_function.h"
> #include "libmesh/dirichlet_boundaries.h"
> #include "libmesh/quadrature_gauss.h"
> #include "libmesh/dof_map.h"
> #include "libmesh/enum_fe_family.h"
> #include "libmesh/enum_order.h"
> #include "libmesh/enum_solver_package.h"
> #include "libmesh/equation_systems.h"
> #include "libmesh/getpot.h"
> #include "libmesh/libmesh.h"
> #include "libmesh/libmesh_common.h"
> #include "libmesh/linear_implicit_system.h"
> #include "libmesh/mesh.h"
> #include <iostream>
> #+end_src
>
>
>
>
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