Sorry for the mistake. Please find the attached file.
On Thu, Aug 31, 2023 at 7:58 PM John Peterson <jwpeter...@gmail.com> wrote:
> Hi,
>
> The config.log that you sent this time does not seem to be related to the
> previous one, but rather to a MOOSE build? And the version of PETSc is
> totally different from the previous log, it is now PETSc 3.11.4.
>
> In any event, the relevant configure output is:
>
> configure:34458: checking for
>> /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt//include/petscversion.h
>> configure:34458: result: yes
>> configure:34525: result: <<< Found PETSc 3.11.4 installation in
>> /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt ... >>>
>> configure:34535: checking whether we can compile a trivial PETSc program
>> configure:34564: mpicxx -c -std=gnu++11
>> -I/opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include
>> -I/opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt//include
>> -I/opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include
>> -I/opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include conftest.cpp >&5
>> In file included from
>> /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petscsys.h:14:0,
>> from
>> /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petscbag.h:4,
>> from
>> /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petsc.h:5,
>> from conftest.cpp:144:
>> /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petscconf.h:85:36:
>> error: expected '}' before '__attribute'
>> #define PETSC_DEPRECATED_ENUM(why) __attribute((deprecated))
>> ^
>> /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petscksp.h:430:76:
>> note: in expansion of macro 'PETSC_DEPRECATED_ENUM'
>> #define KSP_DIVERGED_PCSETUP_FAILED_DEPRECATED
>> KSP_DIVERGED_PCSETUP_FAILED PETSC_DEPRECATED_ENUM("Use
>> KSP_DIVERGED_PC_FAILED (since v3.11)")
>>
>> ^
>> /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petscksp.h:452:15:
>> note: in expansion of macro 'KSP_DIVERGED_PCSETUP_FAILED_DEPRECATED'
>> KSP_DIVERGED_PCSETUP_FAILED_DEPRECATED = -11,
>> ^
>> In file included from
>> /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petscsnes.h:6:0,
>> from
>> /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petscts.h:7,
>> from
>> /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petsc.h:29,
>> from conftest.cpp:144:
>> /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petscksp.h:452:55:
>> error: expected unqualified-id before '=' token
>> KSP_DIVERGED_PCSETUP_FAILED_DEPRECATED = -11,
>> ^
>> /opt/moose/petsc-3.11.4/mpich-3.3_gcc-9.2.0-opt/include/petscksp.h:454:52:
>> error: expected declaration before '}' token
>> KSP_CONVERGED_ITERATING = 0} KSPConvergedReason;
>> ^
>
>
> So there is a syntax error related to the __attribute keyword that appears
> in one of the PETSc header files. This means that the compiler you are
> using:
>
> configure:5255: mpicc --version >&5
>> gcc (Homebrew GCC 5.5.0_7) 5.5.0
>
>
>
> is also different from the one in your previous email, and is apparently
> too old to be able to compile the version of PETSc you are using. Note that
> PETSc 3.11.4 is from March 2019 while GCC 5.5 is from 2017, so this could
> explain the discrepancy. These types of errors are pretty common when
> trying to build old versions of software from source on newer (looks like
> you are using Ubuntu 18.04) machines, so I would recommend using
> contemporary versions of all software.
>
> --
> John
>
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