By reviewing the /etc/lightdm/* files once again I noticed that I had a 
lightdm-gtk-greeter.conf.dpkg-new file and that lightdm-gtk-greeter.conf was a 
symlink pointing to somewhere else *).
After renaming the dpkg-new file to lightdm-gtk-greeter.conf the solid blue 
background was gone. Instead lightdm now showed the greeter background (the 
"background" as set in the .conf file) for a second or so, then the user's 
background also for a second or so and then the greeter background again.
I then set the user-background to false in the .conf file. Lightdm now only 
show the greeter background with a flicker after some two seconds.

By pure chance I found bug #1531224 "lightdm-gtk-greeter flickers once little 
after lightdm starts", which relates the flicker to the intel graphics. And 
indeed the boxes I see the symptom on nowadays all have intel graphics. However 
I am pretty sure that I saw the symptom on my previous desktops -- an i7-2600 
with a radion video card and an i7-3930 with an nvidia one.
Anyway, the workaround of changing the acceleration to UXA instead of SNA as 
mentioned in that bug resolved the flicker for me too. Without the 
user-background in the .conf file set to false lightdm shows the user's 
background and with the user-background in the .conf file set to false the 
greeter background, both without a hitch.

For as far as I am concerned this bug can be closed.
:D

*) For the record: /etc/lightdm/lightdm-gtk-greeter.conf was a symlink
to /etc/alternatives/lightdm-gtk-greeter-config-derivative, which in
turn is a symlink to a (non-existing) /etc/xdg/xdg-xubuntu/lightdm
/lightdm-gtk-greeter.conf file.

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greeter in Ubuntu.
https://bugs.launchpad.net/bugs/1659331

Title:
  user background disappears

Status in lightdm-gtk-greeter package in Ubuntu:
  New

Bug description:
  For some users lightdm displays the user's background for a second or two and 
then shows a solid blue background. Login etc. is OK.
  I have seen this behavior for over a year now (so things already started with 
14.04) on several boxes.

  ProblemType: Bug
  DistroRelease: Ubuntu 16.04
  Package: lightdm 1.18.3-0ubuntu1
  ProcVersionSignature: Ubuntu 4.4.0-59.80-generic 4.4.35
  Uname: Linux 4.4.0-59-generic x86_64
  ApportVersion: 2.20.1-0ubuntu2.5
  Architecture: amd64
  CurrentDesktop: XFCE
  Date: Wed Jan 25 16:10:20 2017
  SourcePackage: lightdm
  UpgradeStatus: No upgrade log present (probably fresh install)

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