we use GUB (see http://git.sv.gnu.org/gitweb/?p=lilypond.git;a=log;h=gub) to build binaries, not Xcode.
By "Xcode", I was referring not so much to the application, as to the set of tools (gcc, ld, gdb) included with it.
We link against http://lilypond.org/download/gub-sources/darwin8-sdk-0.4.tar.gz
I don't think anything in that package is the problem. The most likely culprit for the incompatible binary is the version of ld you were using.
Matthias
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