Maybe you could ask the people at NeoScores.
They are working on (or have aleady released?)  a MusiXML cleaning tool. IIUC 
this is one type of issues they might addtess.

Urs

On 8. September 2014 14:51:18 MESZ, Johan Vromans <[email protected]> wrote:
>Hi,
>
>Often when processing music imported from Sibelius I have the problem
>that Sibelius doesn't seem to care whether a tie connects notes of the
>same pitch. As a consequence, some Sibelius users have become lazy and
>always use a tie even when the pitches differ.
>
>LiliPond emits an error message when it encounters a tie between notes
>of different pitch. This is correct. In fact, I asked for it ;) [1].
>
>However, occasionally it would be handy if I could kindly ask LiliPond
>to treat the ties as slurs if necessary. Yes, I know this is wrong, but
>manually changing hundreds of ties into slurs is not fun.
>
>An XSLT script to change this at the MusicXML level would be
>preferrable.
>
>-- Johan
>
>[1] http://osdir.com/ml/lilypond-user-gnu/2010-11/msg00198.html
>
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