Snaking toward a universal antivenom

Scripps Research scientists discover antibodies that protect against a host of 
lethal snake venoms.

February 21, 2024  
https://www.scripps.edu/news-and-events/press-room/2024/20240221-jardine-antivenom.html


LA JOLLA, CA—Scripps Research scientists have developed an antibody that can 
block the effects of lethal toxins in the venoms of a wide variety of snakes 
found throughout Africa, Asia and Australia.

The antibody, which protected mice from the normally deadly venom of snakes 
including black mambas and king cobras, is described on February 21, 2024, in 
Science Translational Medicine.

https://www.science.org/doi/10.1126/scitranslmed.adk1867

The new research used forms of the toxins produced in the laboratory to screen 
billions of different human antibodies and identify one that can block the 
toxins’ activity. It represents a large step toward a universal antivenom that 
would be effective against the venom of all snakes.

“This antibody works against one of the major toxins found across numerous 
snake species that contribute to tens of thousands of deaths every year,” says 
senior author Joseph Jardine, PhD, assistant professor of immunology and 
microbiology at Scripps Research. “This could be incredibly valuable for people 
in low- and middle-income countries that have the largest burden of deaths and 
injuries from snakebites.”

More than 100,000 people a year, mostly in Asia and Africa, die from snakebite 
envenoming—rendering it more deadly than most neglected tropical diseases. 
Current antivenoms are produced by immunizing animals with snake venom, and 
each generally only works against a single snake species. This means that many 
different antivenoms must be manufactured to treat snake bites in the different 
regions.

Jardine and his colleagues have previously studied how broadly neutralizing 
antibodies against the human immunodeficiency virus (HIV) can work by targeting 
areas of the virus that cannot mutate. They realized that the challenge of 
finding a universal antivenom was similar to their quest for an HIV vaccine; 
just like quickly evolving HIV proteins show small differences between each 
other, different snake venoms have enough variations that an antibody binding 
to one generally doesn’t bind to others. But like HIV, snake toxins also have 
conserved regions that cannot mutate, and an antibody targeting those could 
possibly work against all variants of that toxin.

In the new work, the researchers isolated and compared venom proteins from a 
variety of elapids—a major group of venomous snakes including mambas, cobras 
and kraits. They found that a type of protein called three-finger toxins 
(3FTx), present in all elapid snakes, contained small sections that looked 
similar across different species. In addition, 3FTx proteins are considered 
highly toxic and are responsible for whole-body paralysis, making them an ideal 
therapeutic target.

With the goal of discovering an antibody to block 3FTx, the researchers created 
an innovative platform that put the genes for 16 different 3FTx into mammalian 
cells, which then produced the toxins in the lab. The team then turned to a 
library of more than fifty billion different human antibodies and tested which 
ones bound to the 3FTx protein from the many-banded krait (also known as the 
Chinese krait or Taiwanese krait), which had the most similarities with other 
3FTx proteins. That narrowed their search down to about 3,800 antibodies. Then, 
they tested those antibodies to see which also recognized four other 3FTx 
variants. Among the 30 antibodies identified in that screen, one stood out as 
having the strongest interactions across all the toxin variants: an antibody 
called 95Mat5.

“We were able to zoom in on the very small percentage of antibodies that were 
cross-reactive for all these different toxins,” says Irene Khalek, a Scripps 
Research scientist and first author of the new paper. ‘This was only possible 
because of the platform we developed to screen our antibody library against 
multiple toxins in parallel.”

Jardine, Khalek and their colleagues tested the effect of 95Mat5 on mice 
injected with toxins from the many-banded krait, Indian spitting cobra, black 
mamba and king cobra. In all cases, mice who simultaneously received an 
injection of 95Mat5 were not only protected from death, but also paralysis.

When the researchers studied exactly how 95Mat5 was so effective at blocking 
the 3FTx variants, they discovered that the antibody mimicked the structure of 
the human protein that 3FTx usually binds to. Interestingly, the broad-acting 
HIV antibodies that Jardine has previously studied also work by mimicking a 
human protein.

“It’s incredible that for two completely different problems, the human immune 
system has converged on a very similar solution,” says Jardine. “It also was 
exciting to see that we could make an effective antibody entirely 
synthetically—we did not immunize any animals nor did we use any snakes.”

While 95Mat5 is effective against the venom of all elapids, it does not block 
the venom of vipers—the second group of venomous snakes. Jardine’s group is now 
pursuing broadly neutralizing antibodies against another elapid toxin, as well 
as two viper toxins. They suspect that combining 95Mat5 with these other 
antibodies could provide broad coverage against many—or all—snake venoms.

“We think that a cocktail of these four antibodies could potentially work as a 
universal antivenom against any medically relevant snake in the world,” says 
Khalek.

In addition to Khalek and Jardine, authors of the study, “Synthetic development 
of a broadly neutralizing antibody against snake venom long-chain 
α-neurotoxins,” include Yen Thi Kim Nguyen, Jordan Woehl, Jessica M. Smith, 
Karen Saye-Francisco, Yoojin Kim, Laetitia Misson Mindrebo, Quoc Tran, Mateusz 
Kędzior, Oliver Limbo, Megan Verma, Robyn L. Stanfield, Dennis R. Burton, Devin 
Sok and Ian A. Wilson of Scripps; Evy Boré, Rohit N. Patel, Stefanie K. 
Menzies, Stuart Ainsworth, Robert A. Harrison and Nicholas R. Casewell of the 
Liverpool School of Tropical Medicine; and R. R. Senji Laxme, Suyog Khochare 
and Kartik Sunagar of the Indian Institute of Science.

This work was supported by funding from the National Institutes of Health (R35 
CA231991, U01 AI142756, RM1 HG009490, R35 GM118062, R35 GM118069), the Damon 
Runyon Cancer Research Foundation (2406-20), the Jane Coffin Childs Fund, the 
Mark Foundation for Cancer Research and the Howard Hughes Medical Institute.

Neuroscience Molecular Medicine Jardine, Joseph

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