> Or in other words: why does Debian (otherwise GNU-everything) replace GNU
> md5sum with some non-GNU version (at least in some cases)?

Actually, they did something similar with mpg123.  Debian decided that 
mpg123 could not be included, so they used mpg321 instead, and aliased it 
to mpg123.  Caught me out, but it was a while ago and maybe it's been fixed 
or is irrelevant now.

Andrew

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