> 
> [6477417.633822] systemd-logind[8642]: Failed to fully start up daemon: 
> Input/output error
> 
> Partway through this upgrade I lost the ability to click anything with the 
> mouse, can still run it around the screen and it wakes up the screen saver 
> but can't click > anything.

Have you checked out the obvious things like that you might have a failed disk? 
'dmesg' or /var/log/kern.log should show some errors if this is the case.

Also use smartctl to check the health of the disk and run a self test.

James
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