Rich Shepard wrote:
> \pgfdeclareimage[height=0.5cm]{institution-logo}{aesi-logo.pdf}
> \logo{\pgfuseimage{institution-logo}}

where is that file aesi-logo.pdf stored? Since LyX compiles your file in a 
temporary directory, you must either

* store it somewhere where TeX can find it (i.e., in texmf/)
* give a full path, e.g. 
        
\pgfdeclareimage[height=0.5cm]{institution-logo}{/home/rich/aesi-logo.pdf}
* put the following in the preamble: \def\in...@path{{/path/to/the/lyx/file}}

Jürgen

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