Ok, I don't have an answer to why you get the "institution-logo" overprint (I did here too), but I have a workaround. Replace your two LaTeX commands for the image with

\logo{\includegraphics[bb=0in 9.5in 2.6in 11in, clip, height=0.5cm]{aesi-logo.pdf}}

and see if that helps.

/Paul

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