Good idea, thanks a lot for the suggestion Xu. Here is my statement (I put
the devel list as CC) :

I hereby grant permission to license my contributions to the SAGE
module for LyX under the GNU
General Public Licence, version 2 or later.

Murat Yildizoglu


2012/3/31 Xu Wang <xuwang...@gmail.com>

> Dear Thomas
>
> Excellent news! Thank you for your continued work. I have not taken a fine
> look at this yet, but I also use Ubuntu so it looks like it might be useful.
>
> I'm not sure but I think for your contributions to be used you have to
> give permission explicitly. Look at this email:
>
> http://www.mail-archive.com/lyx-devel@lists.lyx.org/msg161963.html
> You can send something like that to the development list, lyx-devel
>
> And it could be a good idea for Murat to do the same.
>
> I'm not sure though.
>
> In any case, thank you for your continued work. I am appreciative. Xu
>
>
>
> On Sat, Mar 31, 2012 at 3:08 AM, Thomas Coffee <thomasmcof...@gmail.com>wrote:
>
>> Hi Murat and Xu,
>>
>> I found your thread in the archives and did some further work on the
>> LyX-SageTeX module that Murat posted previously.
>>
>> I fixed a few things that did not work for me in the version described
>> earlier, and expanded the module specification to provide some
>> additional conveniences for including literate Sage code in LyX
>> documents. There's still much room for development and customization.
>>
>> The attachments comprise a set of files and a shell script "setup.sh"
>> that should largely automate the configuration process on GNU/Linux
>> systems.
>>
>> *** Help needed:
>>
>> For other interested users, I'd like to upload this to
>> http://wiki.lyx.org/Layouts/Modules, but I get browser errors for
>> links anywhere under the upload path wiki.lyx.org/ipfm. The page
>> http://wiki.lyx.org/Site/AboutUploading also tells me I will need
>> someone to tell me the upload password. Can anyone assist?
>>
>> Thanks,
>>  Thomas
>>
>>
>> > Hi Xu,
>> >
>> > Thank you for your appreciation. I cannot advance anymore without any
>> help
>> > from Lyx gurus.
>> > I think I have extracted all the information I can from the help docs.
>> If I
>> > get any answer to my questions, I can construct a little bit smarter
>> module
>> > but the one we have now is already usable. With some supplementary
>> tricks
>> > from the sagetex documentation and through manual executions of the
>> > latex-sage-latex chain, it is possible to make a lot of computations.
>> >
>> > I was also very agreeably surprised that this module can be used for
>> > conversion to HTML from LyX, with figures and all.
>> >
>> > I attach to this message the module in its actual stage and some
>> > instruction for making the conversion chain functional. I hope this
>> would
>> > already help some of you.
>> >
>> > As soon as I have more information, I will try to complete the module
>> file.
>> >
>> > Best regards,
>> >
>> > Murat
>> >
>> > 2011/10/31 Xu Wang <xuwang...@gmail.com>
>> >
>> > > Dear Murat,
>> > >
>> > > This is great! I have been waiting for something like this for a long
>> > > time. I also like the Sweave-like philosophy of this. It's more
>> transparent
>> > > and reproducible.
>> > >
>> > > I am looking forward to the final release with much excitement.
>> > >
>> > > Thank you for your work!
>> > >
>> > > Best,
>> > >
>> > > Xu
>> > >
>> > >
>> > > On Mon, Oct 31, 2011 at 12:54 PM, Murat Yildizoglu <myi...@gmail.com
>> >wrote:
>> > >
>> > >> Just another mail to correct a problem with the preceding Lyx file
>> (see
>> > >> the new file attached, and the $ signs in ERT boxes, this is
>> connected with
>> > >> the problem I describe below) and ask a question about insets again:
>> > >>
>> > >> What kind of Flex insets can be included in a math mode text? Is this
>> > >> possible at all? Especially in displayed equation where one would
>> like to
>> > >> include results from SAge computations?
>> > >> I cannot write the following in math mode in Lyx, putting the left
>> member
>> > >> in a displayed equation and the right member in a sagecode inset
>> that would
>> > >> be converted to the expression I give
>>  (\sage{integral(x/(x^2+1),x,0,1))
>> > >>        \dfrac{\partial^{4}y}{\partial
>> > >> x^{4}}=\sage{integral(x/(x^2+1),x,0,1)}
>> > >>
>> > >> I meet two problems:
>> > >> 1/ I cannot insert a Flex:sagecommand inset in a displayed equation,
>> Lyx
>> > >> just goes to the next line before inserting it...
>> > >> 2/ I cannot type the sagetex instruction (*sage{}  ) by hand, because
>> > >>  "x^2" in the right member must not be interpreted by LyX, since
>> Sage will
>> > >> need it for its computation.
>> > >>
>> > >> I can of course type everything in an ERT, but this cannot be called
>> > >> "integration" can it? ;-)
>> > >>
>> > >> I have reread again the help document on layouts and insets, and I
>> have
>> > >> checked the files that come in the layout folder of LyX, but cannot
>> find
>> > >> any answer to my question.
>> > >>
>> > >> Sorry for bothering you again with my problems... I hope that Sage
>> > >> integration will interest other people...
>> > >>
>> > >> Murat
>> > >>
>> > >> I definitely need the help of a Lyx wizard who understands well the
>> > >> insets and their integration in Lyx/Latex...
>> > >>
>> > >>
>> > >>
>> > >> 2011/10/31 Murat Yildizoglu <myi...@gmail.com>
>> > >>
>> > >>> Just to show you the kind of niceties that such an integration can
>> > >>> bring, I send you two files. One is the Lyx source and the other
>> one is the
>> > >>> final PDF.
>> > >>> In Lyx, I just click on the  Preview button and wait a little bit
>> to get
>> > >>> the final PDF that I show here, with results of the computations
>> done by
>> > >>> Sage and converted back to Latex.
>> > >>>
>> > >>> The module isfar from perfect yet (this is the first module I am
>> > >>> creating), a better integration between the Latex output by Sage,
>> and the
>> > >>> math mode in LyX would be implemented to have nice equations
>> typeset with
>> > >>> equation numbers and what not. You can also see that the output of
>> the
>> > >>> integral by Sage is not very beautiful...
>> > >>>
>> > >>> I will continue to work on this module, but it is already useful
>> for me
>> > >>> and eliminates some regrets I feel ;-), since I have dropped
>> Scientific
>> > >>> Workplace in favor of LyX.
>> > >>>
>> > >>> I hope that you will like this new possibilities.
>> > >>>
>> > >>> Best regards,
>> > >>>
>> > >>> Murat
>> > >>>
>> > >>> PS. Sage lives in: http://www.sagemath.org
>> > >>>
>> > >>>
>> > >>> --
>> > >>> Prof. Murat Yildizoglu
>> > >>>
>> > >>> Université Montesquieu Bordeaux IV
>> > >>> GREThA (UMR CNRS 5113)
>> > >>> Avenue Léon Duguit
>> > >>> 33608 Pessac cedex
>> > >>> France
>> > >>>
>> > >>> yi...@u-bordeaux4.fr
>> > >>>
>> > >>>  http://yildizoglu.info
>> > >>>
>> > >>> http://www.twitter.com/yildizoglu
>> > >>>
>> > >>>
>> > >>
>> > >>
>> > >> --
>> > >> Prof. Murat Yildizoglu
>> > >>
>> > >> Université Montesquieu Bordeaux IV
>> > >> GREThA (UMR CNRS 5113)
>> > >> Avenue Léon Duguit
>> > >> 33608 Pessac cedex
>> > >> France
>> > >>
>> > >> yi...@u-bordeaux4.fr
>> > >>
>> > >> http://yildizoglu.info
>> > >>
>> > >> http://www.twitter.com/yildizoglu
>> > >>
>> > >>
>> > >
>> >
>> >
>> > --
>> > Prof. Murat Yildizoglu
>> >
>> > Université Montesquieu Bordeaux IV
>> > GREThA (UMR CNRS 5113)
>> > Avenue Léon Duguit
>> > 33608 Pessac cedex
>> > France
>> >
>> > yi...@u-bordeaux4.fr
>> >
>> > h <http://myildi.e-jemed.org/>ttp://yildizoglu.info
>> >
>> > http://www.twitter.com/yildizoglu
>> >
>> > The Sage module allows the use of the open source Sage mathematical
>> platform
>> > for computations in Lyx (with results inserted in the final PDF file),
>> in a
>> > somewhat similar way for R-project with the Sweave module.
>> >
>> > To be able to use it, you must have Sage installed on your computer and
>> the
>> > "sage" command must be in the path.
>> > See : http://www.sagemath.org/
>> >
>> > Sage speaks Latex and can interact with it through the sagetex.sty
>> package.
>> >
>> > See: http://www.sagemath.org/doc/tutorial/sagetex.html#sec-sagetex
>> >
>> > INSTALLATION
>> >
>> > 0/ You must have a working Sage system on your computer and the sage
>> command
>> > must be on the PATH (open a console and type sage and RETURN key to
>> check it
>> > this is the case).
>> >
>> > 1/Add the sage.module in the layouts folder of your local LyX
>> configuration
>> > (depends on the system). Start LyX and reconfigure it.
>> > You can now add the Sage module to a new document. This module provides
>> >    - the environments: sageblock and sagesilent
>> >    - the commands: \sage (to be used in-line) and \sageplot (as an
>> environment,
>> > can be included in a Figure float)
>> > and it needs the sagetex.sty package to be available in your local Tex
>> > installation.
>> > Justfollow the instructions given in the documentation of this package,
>> for
>> > example
>> >
>> >
>> >
>> > 2/ Add the following sections elements in the preferences file that
>> lives in
>> > your personal lyx config folder (depends on the system)
>> >
>> > # FORMATS SECTION ##########################
>> > #
>> >
>> > \format "pdf10" "pdf" "PDF" ""
>> > "\"/Applications/_Editiontextes/Skim.app/Contents/MacOS/Skim\"" ""
>> > "document,vector,menu=export"
>> > \format "sage" "sage" "Sage" "" "" "" "document"
>> > \default_view_format pdf10
>> >
>> > #
>> > # CONVERTERS SECTION ##########################
>> > #
>> >
>> >
>> > \converter "latex" "sage" "latex" "latex"
>> > \converter "sage" "pdf10" "compile-pdf-sage.sh $$b" ""
>> >
>> > 3/ You need a bash file for automatically running the .sage file and
>> get the
>> > results in the final pdf file
>> >
>> > This compile-pdf-sage.sh should be on your path, with the following
>> content:
>> > #!/bin/sh
>> >
>> /Applications/_Recherche/Sage-4.7-OSX-64bit-10.6.app/Contents/Resources/sage/sage
>> >  $1.sage
>> > pdflatex $1.tex
>> > exit 0
>> >
>> > Otherwise,
>> > You can just convert your Lyx document to Sage and then go to the
>> temporary
>> > folder and execute manually
>> >
>> > (pdf)latex mysagedoc.tex -> generates mysagedoc.sage
>> > sage mysagedoc.sage
>> > (pdf)latex mysagedoc.tex
>> >
>> > Remaining problems and questions:
>> > 1/ How to setup options for environments? Example:
>> > \sageplot[width=12cm]{plot(sin(x), 0, pi), axes=True} -> Bug fix by
>> Richard
>> > 2/ How to insert Flex insets in math mode, in displayed equations?
>> >  $\dfrac{\partial^{4}y}{\partial
>> x^{4}}=\sage{integral(x/(x^2+1),x,0,1)}$
>> > x^2 must not be interpreted by LyX in the second part of the equality,
>> since
>> > Sage will need it for its computation.
>> > 3/ \sage{} does not automatically switch to the math mode. These insets
>> must be
>> > inserted between two $ sign put in ERT boxes. Then, the problem remains
>> for the
>> > displayed equations where one would like to include Sage results.
>>
>
>


-- 
Prof. Murat Yildizoglu

Université Montesquieu Bordeaux IV
GREThA (UMR CNRS 5113)
Avenue Léon Duguit
33608 Pessac cedex
France

Bureau : F-331

yi...@u-bordeaux4.fr

http://yildizoglu.info

http://www.twitter.com/yildizoglu

Reply via email to