No you can recover everything. the time machine in the command r option 
recovers basically the OS  so if you messed up some ware or blew something up 
you can recover the OS. and it will all work the same again before the mistake.

To recover documents you can do that with in the os itself using time machine.

1. brows to the folder you want to recover

2. go to extras, time machine, time machine controls and wait.

3. Invoke the window chooser and enter on the time machine controls. you will 
be presented with a time line. Go using the slider  or the buttons to the date 
you want to restore to and hit restore.

you might have to navigate twice to the folder whilst in this mode. I don't 
know why, but this method works.

You can always copy and pate documents by hand if you don't have them on your 
machine as this is is only for stuff that is there.
On Aug 28, 2012, at 4:49 AM, Phil Halton <[email protected]> wrote:

> I looked at the Bootup options with Command R held down during startup and 
> see that one option is recovering from a time machine backup. Can you recover 
> your hard disk with OS, apps etc, or is time machine just for documents and 
> folders (data)? I'll be addressing the issue of a backup strategy soon and if 
> Time machine will restore the OS Apps and documents, then that's one route 
> I'll consider.
> 
> Thanks for any and all help.
> 
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