I am trying to use the setup assistant to move my ten tons virtual stuff from 
my mid-2009 MBP to a brand new mid-2012 MBP. The mid-2009 MBP is running Mac OS 
X 10.8.2, and is up-to-date.
 
I first tried to do this over a network, as I had left my firewire-800 cable 
elsewhere. The setup would always hang at the same spot.
 
Now I have tried to use the setup assistant via FireWire four times, with 
miserable results all four times:
 
The /Applications folder gets horribly mangled every time. Nearly all of the 
applications (whether Apple or not) are marked out with the circle-slash, and 
say that they are damaged. Oddly enough, the set of mangled applications has 
not been the same from attempt to attempt.
 
None of my extra prefpanes get brought over. Perhaps this is normal (though 
bad) behavior.
 
To top things off, my new computer couldn't boot after every one of these 
misguided setups. Each time I restarted after the setup, it got into an endless 
loop of wait cursor, no wait cursor, wait cursor.
 
In case this is a help: After the setup assistant thinks it is done and 
Mountain Lion starts up, the partitions on computer-as-external-drive show up 
twice. (There are two partitions on my old MBP, say A and B. When Mountain Lion 
starts, it has two A's and two B's on the desktop.) This is odd.
 
As an aside, I had installed most of my applications were put in 
/Applications/AAApplications, and none of these were brought over. According to 
the fantastically helpful Pondini site (http://pondini.org/OSX/SetupLion.html), 
this is normal, because only the top level of the folder will be brought over. 
This makes me wonder what use the setup assistant is in general.
 
I did try to use my time machine backup from an external drive, but gave up 
because the time machine backups are done wirelessly. Hence, the setup 
assistant cannot find them when the external drive is attached to the new 
computer. I have not yet tried hooking the new MBP and the backup drive to my 
router so that I can use the Time Machine backup. [ed: it seems insane to have 
wireless time machine backups treated so differently]
 
If anyone has any troubleshooting advice, I would be greatly obliged. This is 
more than a little frustrating.
 
Thanks,
 
Bill

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