I'm working an a G4 mac running 10.4.10. I'm trying to build and
install NCO. When the build gets to the stage of "make all" in the
nco directory I receiving the error "internal link edit command
failed". I'm not certain how to proceed. What does the community
suggest? The full build output is attached below.
--
---------------------------------------------------------------
Don Stark, PhD [EMAIL PROTECTED]
NCAR, Boulder CO
303.497.2472
---------------------------------------------------------------
$ sudo /opt/local/bin/port install nco
---> Fetching expat
---> Attempting to fetch expat-2.0.1.tar.gz from http://
downloads.sourceforge.net/expat
---> Verifying checksum(s) for expat
---> Extracting expat
---> Configuring expat
---> Building expat with target all
---> Staging expat into destroot
---> Installing expat 2.0.1_0
---> Activating expat 2.0.1_0
---> Cleaning expat
---> Fetching libiconv
---> Attempting to fetch libiconv-1.11.tar.gz from http://
ftp.gnu.org/gnu/libiconv
---> Verifying checksum(s) for libiconv
---> Extracting libiconv
---> Configuring libiconv
---> Building libiconv with target all
---> Staging libiconv into destroot
---> Installing libiconv 1.11_4+darwin_8
---> Activating libiconv 1.11_4+darwin_8
---> Cleaning libiconv
---> Fetching gettext
---> Attempting to fetch gettext-0.16.1.tar.gz from http://
ftp.gnu.org/gnu/gettext
---> Verifying checksum(s) for gettext
---> Extracting gettext
---> Applying patches to gettext
---> Configuring gettext
---> Building gettext with target all
---> Staging gettext into destroot
---> Installing gettext 0.16.1_0
---> Activating gettext 0.16.1_0
---> Cleaning gettext
---> Fetching m4
---> Attempting to fetch m4-1.4.9.tar.bz2 from http://ftp.gnu.org/
gnu/m4
---> Verifying checksum(s) for m4
---> Extracting m4
---> Configuring m4
---> Building m4 with target all
---> Staging m4 into destroot
---> Installing m4 1.4.9_0
---> Activating m4 1.4.9_0
---> Cleaning m4
---> Fetching bison
---> Attempting to fetch bison-2.3.tar.bz2 from http://ftp.gnu.org/
gnu/bison
---> Verifying checksum(s) for bison
---> Extracting bison
---> Configuring bison
---> Building bison with target all
---> Staging bison into destroot
---> Installing bison 2.3_0
---> Activating bison 2.3_0
---> Cleaning bison
---> Fetching pkgconfig
---> Verifying checksum(s) for pkgconfig
---> Extracting pkgconfig
---> Configuring pkgconfig
---> Building pkgconfig with target all
---> Staging pkgconfig into destroot
---> Installing pkgconfig 0.21_0
---> Activating pkgconfig 0.21_0
---> Cleaning pkgconfig
---> Fetching zlib
---> Attempting to fetch zlib-1.2.3.tar.bz2 from http://www.zlib.net/
---> Verifying checksum(s) for zlib
---> Extracting zlib
---> Applying patches to zlib
---> Configuring zlib
---> Building zlib with target all
---> Staging zlib into destroot
---> Installing zlib 1.2.3_1
---> Activating zlib 1.2.3_1
---> Cleaning zlib
---> Fetching curl
---> Attempting to fetch curl-7.16.2.tar.bz2 from http://
curl.haxx.se/download/
---> Verifying checksum(s) for curl
---> Extracting curl
---> Configuring curl
---> Building curl with target all
---> Staging curl into destroot
---> Installing curl 7.16.2_0+darwin_8
---> Activating curl 7.16.2_0+darwin_8
---> Cleaning curl
---> Fetching libxml2
---> Attempting to fetch libxml2-2.6.28.tar.gz from http://
xmlsoft.org/sources/
---> Verifying checksum(s) for libxml2
---> Extracting libxml2
---> Configuring libxml2
---> Building libxml2 with target all
---> Staging libxml2 into destroot
---> Installing libxml2 2.6.28_1
---> Activating libxml2 2.6.28_1
---> Cleaning libxml2
---> Fetching openssl
---> Attempting to fetch openssl-0.9.8e.tar.gz from http://
www.openssl.org/source/
---> Verifying checksum(s) for openssl
---> Extracting openssl
---> Applying patches to openssl
---> Configuring openssl
---> Building openssl with target all
---> Staging openssl into destroot
---> Installing openssl 0.9.8e_0+darwin_8
---> Activating openssl 0.9.8e_0+darwin_8
---> Cleaning openssl
---> Fetching libdap
---> Attempting to fetch libdap-3.7.5.tar.gz from ftp://
ftp.unidata.ucar.edu/pub/opendap/source/
---> Attempting to fetch libdap-3.7.5.tar.gz from ftp://
ftp.unidata.ucar.edu/pub/opendap/source/o
ld/
---> Verifying checksum(s) for libdap
---> Extracting libdap
---> Configuring libdap
---> Building libdap with target all
---> Staging libdap into destroot
---> Installing libdap 3.7.5_0
---> Activating libdap 3.7.5_0
---> Cleaning libdap
---> Fetching gmp
---> Attempting to fetch gmp-4.2.1.tar.bz2 from http://ftp.gnu.org/
gnu/gmp
---> Verifying checksum(s) for gmp
---> Extracting gmp
---> Configuring gmp
---> Building gmp with target all
---> Staging gmp into destroot
---> Running ranlib on static libraries
---> Installing gmp 4.2.1_4+test
---> Activating gmp 4.2.1_4+test
---> Cleaning gmp
---> Fetching mpfr
---> Attempting to fetch patch01 from http://www.mpfr.org/mpfr-2.2.1/
---> Attempting to fetch patch02 from http://www.mpfr.org/mpfr-2.2.1/
---> Attempting to fetch patch03 from http://www.mpfr.org/mpfr-2.2.1/
---> Attempting to fetch patch04 from http://www.mpfr.org/mpfr-2.2.1/
---> Attempting to fetch patch05 from http://www.mpfr.org/mpfr-2.2.1/
---> Attempting to fetch mpfr-2.2.1.tar.bz2 from http://www.mpfr.org/
mpfr-2.2.1/
---> Verifying checksum(s) for mpfr
---> Extracting mpfr
---> Applying patches to mpfr
---> Configuring mpfr
---> Building mpfr with target all
---> Staging mpfr into destroot
---> Installing mpfr 2.2.1_1+darwin_8
---> Activating mpfr 2.2.1_1+darwin_8
---> Cleaning mpfr
---> Fetching gcc40
---> Attempting to fetch gcc-core-4.0.4.tar.bz2 from ftp://
gcc.gnu.org/pub/gcc/releases/gcc-4.0.4
/
---> Attempting to fetch gcc-fortran-4.0.4.tar.bz2 from ftp://
gcc.gnu.org/pub/gcc/releases/gcc-4.
0.4/
---> Attempting to fetch gcc-g++-4.0.4.tar.bz2 from ftp://
gcc.gnu.org/pub/gcc/releases/gcc-4.0.4/
---> Attempting to fetch gcc-java-4.0.4.tar.bz2 from ftp://
gcc.gnu.org/pub/gcc/releases/gcc-4.0.4
/
---> Attempting to fetch gcc-objc-4.0.4.tar.bz2 from ftp://
gcc.gnu.org/pub/gcc/releases/gcc-4.0.4
/
---> Verifying checksum(s) for gcc40
---> Extracting gcc40
---> Configuring gcc40
---> Building gcc40 with target profiledbootstrap
---> Staging gcc40 into destroot
---> Installing gcc40 4.0.4_0+darwin_8
---> Activating gcc40 4.0.4_0+darwin_8
---> Cleaning gcc40
---> Fetching libnc-dap
---> Attempting to fetch libnc-dap-3.7.0.tar.gz from ftp://
ftp.unidata.ucar.edu/pub/opendap/sourc
e/
---> Verifying checksum(s) for libnc-dap
---> Extracting libnc-dap
---> Applying patches to libnc-dap
---> Configuring libnc-dap
---> Building libnc-dap with target all
---> Staging libnc-dap into destroot
---> Installing libnc-dap 3.7.0_1
---> Activating libnc-dap 3.7.0_1
---> Cleaning libnc-dap
---> Fetching netcdf
---> Attempting to fetch netcdf-3.6.2.tar.bz2 from ftp://
ftp.unidata.ucar.edu/pub/netcdf/
---> Verifying checksum(s) for netcdf
---> Extracting netcdf
---> Configuring netcdf
---> Building netcdf with target all
---> Staging netcdf into destroot
---> Installing netcdf 3.6.2_0
---> Activating netcdf 3.6.2_0
---> Cleaning netcdf
---> Fetching perl5.8
---> Attempting to fetch perl-5.8.8.tar.bz2 from http://www.cpan.org/
src/5.0/
---> Verifying checksum(s) for perl5.8
---> Extracting perl5.8
---> Applying patches to perl5.8
---> Configuring perl5.8
---> Building perl5.8 with target all
---> Staging perl5.8 into destroot
---> Installing perl5.8 5.8.8_0+darwin_8
---> Activating perl5.8 5.8.8_0+darwin_8
---> Cleaning perl5.8
---> Fetching udunits
---> Attempting to fetch udunits.tar.Z from ftp://
ftp.unidata.ucar.edu/pub/udunits/
---> Verifying checksum(s) for udunits
---> Extracting udunits
---> Configuring udunits
---> Building udunits with target all
---> Staging udunits into destroot
---> Installing udunits 1.12.4_0
---> Activating udunits 1.12.4_0
---> Cleaning udunits
---> Fetching nco
---> Attempting to fetch nco-3.1.9.tar.gz from http://
nco.sourceforge.net/src/
---> Verifying checksum(s) for nco
---> Extracting nco
---> Applying patches to nco
---> Configuring nco
---> Building nco with target all
Error: Target com.apple.build returned: shell command " cd "/opt/
local/var/db/dports/build/_opt_lo
cal_var_db_dports_sources_rsync.rsync.darwinports.org_dpupdate_dports_sc
ience_nco/work/nco-3.1.9"
&& make all " returned error 2
Command output: gcc -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include/
malloc -I/opt/local/include -I
/opt/local/include/libnc-dap -DNC_64BIT_OFFSET -fno-common -O2 -
std=c99 -D_BSD_SOURCE -c nco_var_l
st.c -o nco_var_lst.o >/dev/null 2>&1
/bin/sh ../../libtool --tag=CXX --tag=CXX --preserve-dup-deps --
tag=CC --mode=compile gcc -DHAVE_C
ONFIG_H -I. -I. -I../.. -I/usr/include/malloc -I/opt/local/include -
I/opt/local/include/libnc-da
p -DNC_64BIT_OFFSET -fno-common -O2 -std=c99 -D_BSD_SOURCE -c -o
nco_var_rth.lo nco_var_rth.c
gcc -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include/malloc -I/opt/
local/include -I/opt/local/inclu
de/libnc-dap -DNC_64BIT_OFFSET -fno-common -O2 -std=c99 -D_BSD_SOURCE
-c nco_var_rth.c -fno-commo
n -DPIC -o .libs/nco_var_rth.o
In file included from nco_var_rth.h:20,
from nco_var_rth.c:9:
/opt/local/include/netcdf.h:95:1: warning: "NC_64BIT_OFFSET" redefined
<command line>:1:1: warning: this is the location of the previous
definition
gcc -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include/malloc -I/opt/
local/include -I/opt/local/inclu
de/libnc-dap -DNC_64BIT_OFFSET -fno-common -O2 -std=c99 -D_BSD_SOURCE
-c nco_var_rth.c -o nco_var_
rth.o >/dev/null 2>&1
/bin/sh ../../libtool --tag=CXX --tag=CXX --preserve-dup-deps --
tag=CC --mode=compile gcc -DHAVE_C
ONFIG_H -I. -I. -I../.. -I/usr/include/malloc -I/opt/local/include -
I/opt/local/include/libnc-da
p -DNC_64BIT_OFFSET -fno-common -O2 -std=c99 -D_BSD_SOURCE -c -o
nco_var_scv.lo nco_var_scv.c
gcc -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include/malloc -I/opt/
local/include -I/opt/local/inclu
de/libnc-dap -DNC_64BIT_OFFSET -fno-common -O2 -std=c99 -D_BSD_SOURCE
-c nco_var_scv.c -fno-commo
n -DPIC -o .libs/nco_var_scv.o
In file included from nco_var_scv.h:20,
from nco_var_scv.c:9:
/opt/local/include/netcdf.h:95:1: warning: "NC_64BIT_OFFSET" redefined
<command line>:1:1: warning: this is the location of the previous
definition
gcc -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include/malloc -I/opt/
local/include -I/opt/local/inclu
de/libnc-dap -DNC_64BIT_OFFSET -fno-common -O2 -std=c99 -D_BSD_SOURCE
-c nco_var_scv.c -o nco_var_
scv.o >/dev/null 2>&1
/bin/sh ../../libtool --tag=CXX --tag=CXX --preserve-dup-deps --
tag=CC --mode=compile gcc -DHAVE_C
ONFIG_H -I. -I. -I../.. -I/usr/include/malloc -I/opt/local/include -
I/opt/local/include/libnc-da
p -DNC_64BIT_OFFSET -fno-common -O2 -std=c99 -D_BSD_SOURCE -c -o
nco_var_utl.lo nco_var_utl.c
gcc -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include/malloc -I/opt/
local/include -I/opt/local/inclu
de/libnc-dap -DNC_64BIT_OFFSET -fno-common -O2 -std=c99 -D_BSD_SOURCE
-c nco_var_utl.c -fno-commo
n -DPIC -o .libs/nco_var_utl.o
In file included from nco_var_utl.h:26,
from nco_var_utl.c:9:
/opt/local/include/netcdf.h:95:1: warning: "NC_64BIT_OFFSET" redefined
<command line>:1:1: warning: this is the location of the previous
definition
gcc -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include/malloc -I/opt/
local/include -I/opt/local/inclu
de/libnc-dap -DNC_64BIT_OFFSET -fno-common -O2 -std=c99 -D_BSD_SOURCE
-c nco_var_utl.c -o nco_var_
utl.o >/dev/null 2>&1
/bin/sh ../../libtool --tag=CXX --tag=CXX --preserve-dup-deps --
tag=CC --mode=link gcc -fno-commo
n -O2 -std=c99 -D_BSD_SOURCE -L/opt/local/lib -o libnco.la -rpath /
opt/local/lib -release 3.1.9
nco_att_utl.lo nco_bnr.lo nco_cln_utl.lo nco_cnf_dmn.lo
nco_cnf_typ.lo nco_cnv_arm.lo nco_cnv_cs
m.lo nco_ctl.lo nco_dbg.lo nco_dmn_utl.lo nco_fl_utl.lo nco_lmt.lo
nco_lst_utl.lo nco_mmr.lo nco_m
sa.lo nco_mss_val.lo nco_netcdf.lo nco_omp.lo nco_pck.lo nco_prn.lo
nco_rec_var.lo nco_rth_flt.lo
nco_rth_utl.lo nco_scl_utl.lo nco_scm.lo nco_sng_utl.lo
nco_var_avg.lo nco_var_lst.lo nco_var_rth.
lo nco_var_scv.lo nco_var_utl.lo -ludunits -lresolv -lintl -lm -lnc-
dap -L/opt/local/lib -lnc-dap
-L/opt/local/lib -ldap -ldapclient -L/opt/local/lib -lcurl -L/opt/
local/lib -L/opt/local/lib -l
z -L/opt/local/lib -lxml2 -lz -lpthread -L/opt/local/lib -liconv -lm -
lpthread -ludunits
g++ -dynamiclib -single_module ${wl}-undefined ${wl}dynamic_lookup -
o .libs/libnco-3.1.9.dylib .l
ibs/nco_att_utl.o .libs/nco_bnr.o .libs/nco_cln_utl.o .libs/
nco_cnf_dmn.o .libs/nco_cnf_typ.o .lib
s/nco_cnv_arm.o .libs/nco_cnv_csm.o .libs/nco_ctl.o .libs/
nco_dbg.o .libs/nco_dmn_utl.o .libs/nco_
fl_utl.o .libs/nco_lmt.o .libs/nco_lst_utl.o .libs/nco_mmr.o .libs/
nco_msa.o .libs/nco_mss_val.o .
libs/nco_netcdf.o .libs/nco_omp.o .libs/nco_pck.o .libs/
nco_prn.o .libs/nco_rec_var.o .libs/nco_rt
h_flt.o .libs/nco_rth_utl.o .libs/nco_scl_utl.o .libs/nco_scm.o .libs/
nco_sng_utl.o .libs/nco_var_
avg.o .libs/nco_var_lst.o .libs/nco_var_rth.o .libs/
nco_var_scv.o .libs/nco_var_utl.o -L/opt/loca
l/lib -ludunits -lresolv /opt/local/lib/libintl.dylib -lm /opt/local/
lib/libz.dylib /opt/local/lib
/libnc-dap.dylib /opt/local/lib/libdap.dylib /opt/local/lib/
libdapclient.dylib /opt/local/lib/libc
url.dylib -lz /opt/local/lib/libxml2.dylib -lz -lpthread /opt/local/
lib/libiconv.dylib -lm -lpthre
ad -ludunits -install_name /opt/local/lib/libnco-3.1.9.dylib
ld: flag: -undefined dynamic_lookup can't be used with
MACOSX_DEPLOYMENT_TARGET environment variab
le set to: 10.1
/usr/bin/libtool: internal link edit command failed
make[3]: *** [libnco.la] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
Error: Status 1 encountered during processing.
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