I did actually manually install py27-numeric first, so maybe that's what made the difference.
On Fri, Jul 29, 2011 at 12:54 PM, Scott Webster <[email protected]> wrote: > I just installed py27-biopython without incident on my snow leopard > system. The dependencies that were installed because of this were: > py27-numeric > py27-tkinter > py27-pil > py27-reportlab > > I already had everything else. > > Scott > > On Fri, Jul 29, 2011 at 12:40 PM, JP Glutting <[email protected]> wrote: >> No, I don't understand it either. In fact, I am not sure why Reportlab or >> Biopython depend on numeric, if anything is should be numpy (there may be >> some issues I don't understand, but Reportlab should only depend on the >> PIL: http://www.reportlab.com/software/installation/ ). I don't really want >> numeric, it is old and has been pretty much replaced by numpy, as far as I >> am aware. Biopython specifically mentions NumPy, and Reportlab doesn't >> mention either. >> http://biopython.org/DIST/docs/install/Installation.html#htoc11 >> >> On Fri, Jul 29, 2011 at 2:56 PM, Jeremy Huddleston <[email protected]> >> wrote: >>> >>> Adding jmr. >>> >>> I'm not sure why you're seeing "is replaced by py24-numeric" because there >>> is no py24-numeric. You should use py-numeric. >>> >>> >>> On Jul 29, 2011, at 11:51, Frank Schima wrote: >>> >>> > I see the same problem and it occurred because of selfupdate. >>> > >>> > $sudo port selfupdate >>> > .... >>> > $ port outdated >>> > The following installed ports are outdated: >>> > py26-numeric 24.2_0 < 24.2_2 >>> > $ port installed py26-numeric >>> > The following ports are currently installed: >>> > py26-numeric @24.2_0 (active) >>> > $ sudo port upgrade py26-numeric >>> > ---> py26-numeric is replaced by py24-numeric >>> > ... >>> > >>> > >>> > >>> > >>> > On Jul 29, 2011, at 11:35 AM, Jeremy Huddleston wrote: >>> > >>> >> port selfupdate >>> >> >>> >> On Jul 29, 2011, at 10:26, JP Glutting wrote: >>> >> >>> >>> I just tried to upgrade outdated packages, and the first message on >>> >>> the list >>> >>> was: >>> >>> >>> >>> --> py27-numeric is replaced by py24-numeric >>> >>> >>> >>> I imagine that pyXX-numeric is deprecated, to fall back on >>> >>> py24-numeric, but >>> >>> this affects py27-reportlab (which in turn affects py27-biopython, >>> >>> which is >>> >>> what I want). It seems like it would be awkward to run biopython using >>> >>> python 2.4. Especially since biopython is dropping python2.4 support ( >>> >>> http://news.open-bio.org/news/2010/11/dropping-python24-support/ ). >>> >>> >>> >>> Biopython should depend on numpy, not numeric. I can't see a ticket on >>> >>> this >>> >>> yet. Should I open one? >>> >>> >>> >>> Thanks, >>> >>> JP >>> >>> _______________________________________________ >>> >>> macports-users mailing list >>> >>> [email protected] >>> >>> http://lists.macosforge.org/mailman/listinfo.cgi/macports-users >>> >> >>> >> _______________________________________________ >>> >> macports-users mailing list >>> >> [email protected] >>> >> http://lists.macosforge.org/mailman/listinfo.cgi/macports-users >>> > >>> >>> _______________________________________________ >>> macports-users mailing list >>> [email protected] >>> http://lists.macosforge.org/mailman/listinfo.cgi/macports-users >> >> >> _______________________________________________ >> macports-users mailing list >> [email protected] >> http://lists.macosforge.org/mailman/listinfo.cgi/macports-users >> >> > _______________________________________________ macports-users mailing list [email protected] http://lists.macosforge.org/mailman/listinfo.cgi/macports-users
