On Feb 28, 2013, at 04:41, Masha Vecherkovskaya wrote:

> Am I right in feeling (not knowing just feeling), that perl which came with 
> OS X is different from what MacPorts install?

That might depend on your OS X version. I don't remember what version of perl 
comes with each version of OS X. But you can see what versions are available in 
MacPorts and use one you like.


> If so, will I run into troubles with my ports if I install and use CPAN to 
> install some modules to run a program (http://circos.ca)

Don't use CPAN to install modules into the MacPorts prefix; find the MacPorts 
port corresponding to the CPAN module you want and install that instead. 
Generally, if you want a module Foo::Bar, the port is p5-foo-bar. But you'll 
want to choose the subport for the version of perl you want, e.g. 
p5.12-foo-bar. If we don't have a port for the module you want yet, request 
one, or better yet, create one; the cpan2port script can give you a starting 
point for that.


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