I just updated hdf5 and hdf5-18:
hdf5 1.10.0_1 < 1.10.0-patch1_0
hdf5-18 1.8.16_6 < 1.8.17_0
Now when I try to use pandas to open an HDF5 file I get this error:
Warning! ***HDF5 library version mismatched error***
The HDF5 header files used to compile this application do not match
the version used by the HDF5 library to which this application is linked.
Data corruption or segmentation faults may occur if the application continues.
This can happen when an application was compiled by one version of HDF5 but
linked with a different version of static or shared HDF5 library.
You should recompile the application or check your shared library related
settings such as 'LD_LIBRARY_PATH'.
You can, at your own risk, disable this warning by setting the environment
variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'.
Setting it to 2 or higher will suppress the warning messages totally.
Headers are 1.8.16, library is 1.8.17
I tried uninstalling and reinstalling pandas and py27-tables, but that didn’t
So, I’m not sure where the bug actually is, what to do about it, or what port
to file a bug report against.
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